Variant report
| Variant | rs6933799 |
|---|---|
| Chromosome Location | chr6:24054379-24054380 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:24052796..24054479-chr6:24058448..24061278,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10085174 | 1.00[EUR][1000 genomes] |
| rs11963333 | 1.00[EUR][1000 genomes] |
| rs11963385 | 1.00[EUR][1000 genomes] |
| rs11964299 | 1.00[EUR][1000 genomes] |
| rs2005511 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57920151 | 1.00[EUR][1000 genomes] |
| rs59166698 | 1.00[EUR][1000 genomes] |
| rs73389789 | 1.00[EUR][1000 genomes] |
| rs73391913 | 1.00[EUR][1000 genomes] |
| rs73391954 | 1.00[EUR][1000 genomes] |
| rs73391991 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv883479 | chr6:23804221-24090497 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv462660 | chr6:24052526-24080370 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv601145 | chr6:24052526-24080370 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3368740 | chr6:24054028-24054565 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:24054200-24054600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
