Variant report

Variant	rs58119616
Chromosome Location	chr11:108744142-108744143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108743296..108746092-chr11:108747045..108750308,3	K562	blood:
2	chr11:108742339..108744507-chr11:108746363..108748537,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11821743	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108632	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108749	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41422546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556767	0.84[AFR][1000 genomes]
rs73558654	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73560832	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937025	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
3	chr11:108734600-108753200	Weak transcription	GM12878-XiMat	blood
4	chr11:108739400-108744400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:108739400-108745200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:108740600-108744800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:108740800-108744200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:108740800-108744400	Enhancers	NHEK	skin
9	chr11:108741800-108744400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:108741800-108750400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:108741800-108756600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:108742000-108744200	Enhancers	A549	lung
13	chr11:108742400-108753400	Weak transcription	Ovary	ovary
14	chr11:108743000-108744200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr11:108743000-108744200	Enhancers	NHDF-Ad	bronchial
16	chr11:108743200-108744800	Flanking Active TSS	Osteobl	bone
17	chr11:108743400-108744600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:108743400-108745400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:108743600-108744200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:108743600-108744200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:108743600-108744200	Enhancers	HMEC	breast
22	chr11:108743600-108744200	Enhancers	HSMMtube	muscle
23	chr11:108743600-108744400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:108743600-108744400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:108743600-108744800	Enhancers	HSMM	muscle
26	chr11:108743800-108744800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:108743800-108746600	Enhancers	NH-A	brain
28	chr11:108744000-108744200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr11:108744000-108746200	Enhancers	HUVEC	blood vessel
30	chr11:108744000-108754000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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