Variant report

Variant	rs7937025
Chromosome Location	chr11:108736872-108736873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108722635..108725308-chr11:108736229..108737984,2	K562	blood:
2	chr11:108735096..108738037-chr11:108740814..108742369,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11821743	1.00[AMR][1000 genomes]
rs17108632	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108645	1.00[AMR][1000 genomes]
rs17108749	1.00[AMR][1000 genomes]
rs41422546	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58119616	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59061105	0.81[AFR][1000 genomes]
rs73558654	1.00[AMR][1000 genomes]
rs73560832	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108707600-108740800	Weak transcription	HMEC	breast
2	chr11:108710200-108738200	Weak transcription	Gastric	stomach
3	chr11:108715400-108738200	Weak transcription	K562	blood
4	chr11:108721600-108742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:108725000-108737000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:108725000-108739600	Weak transcription	A549	lung
7	chr11:108725000-108740000	Weak transcription	NHDF-Ad	bronchial
8	chr11:108725000-108741000	Weak transcription	HSMMtube	muscle
9	chr11:108725000-108741400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:108725400-108737200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:108725400-108738400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:108725400-108740600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:108725400-108740800	Weak transcription	NHEK	skin
14	chr11:108725400-108741000	Weak transcription	Brain Angular Gyrus	brain
15	chr11:108725800-108740000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:108726200-108740400	Weak transcription	Primary B cells from cord blood	blood
17	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
19	chr11:108728600-108741000	Weak transcription	Primary T cells from cord blood	blood
20	chr11:108729800-108737200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr11:108730000-108737000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:108730000-108740400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:108734600-108753200	Weak transcription	GM12878-XiMat	blood
24	chr11:108734800-108743600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:108735800-108741200	Weak transcription	Fetal Heart	heart
26	chr11:108736000-108741000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:108736000-108741800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:108736200-108739600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:108736400-108739400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:108736400-108740600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:108736600-108739800	Weak transcription	Osteobl	bone
32	chr11:108736600-108740400	Weak transcription	NH-A	brain

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