Variant report

Variant	rs73558654
Chromosome Location	chr11:108741748-108741749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108735096..108738037-chr11:108740814..108742369,2	K562	blood:
2	chr11:108568310..108568880-chr11:108741623..108742180,2	K562	blood:
3	chr11:108658928..108659997-chr11:108741741..108742558,3	MCF-7	breast:
4	chr11:108568251..108569546-chr11:108741508..108742629,6	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11821743	1.00[AMR][1000 genomes]
rs17108632	1.00[AMR][1000 genomes]
rs17108645	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17108749	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41422546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58119616	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73560832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937025	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108721600-108742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
4	chr11:108734600-108753200	Weak transcription	GM12878-XiMat	blood
5	chr11:108734800-108743600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:108736000-108741800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:108739000-108744000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr11:108739400-108742400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:108739400-108744400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:108739400-108745200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:108739600-108742600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:108739800-108744000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr11:108740000-108742000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:108740400-108741800	Enhancers	HSMM	muscle
15	chr11:108740400-108742400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:108740600-108742400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:108740600-108744800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:108740800-108741800	Enhancers	HMEC	breast
19	chr11:108740800-108742000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:108740800-108742600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:108740800-108743800	Enhancers	NHLF	lung
22	chr11:108740800-108744200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:108740800-108744400	Enhancers	NHEK	skin
24	chr11:108741000-108741800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:108741000-108742000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr11:108741000-108742000	Enhancers	Fetal Kidney	kidney
27	chr11:108741000-108742000	Enhancers	HepG2	liver
28	chr11:108741000-108742000	Flanking Active TSS	HUVEC	blood vessel
29	chr11:108741000-108743800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr11:108741200-108741800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:108741200-108741800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:108741200-108741800	Enhancers	Fetal Heart	heart
33	chr11:108741200-108741800	Weak transcription	Ovary	ovary
34	chr11:108741200-108741800	Flanking Active TSS	NH-A	brain
35	chr11:108741200-108742000	Flanking Active TSS	A549	lung
36	chr11:108741400-108741800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:108741400-108741800	Flanking Active TSS	Osteobl	bone
38	chr11:108741400-108742000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:108741400-108742600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:108741400-108742800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:108741400-108743600	Weak transcription	HSMMtube	muscle
42	chr11:108741600-108742000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr11:108741600-108742600	Enhancers	NHDF-Ad	bronchial
44	chr11:108741600-108742800	Weak transcription	Brain Angular Gyrus	brain

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