Variant report

Variant	rs58136961
Chromosome Location	chr10:49586835-49586836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs57719423	0.81[AFR][1000 genomes]
rs57796922	0.81[AFR][1000 genomes]
rs58206495	0.81[AFR][1000 genomes]
rs60303520	0.81[AFR][1000 genomes]
rs73293156	0.81[AFR][1000 genomes]
rs73293183	0.81[AFR][1000 genomes]
rs73293187	0.81[AFR][1000 genomes]
rs73293190	0.81[AFR][1000 genomes]
rs73293192	0.81[AFR][1000 genomes]
rs73293201	0.81[AFR][1000 genomes]
rs73293515	0.81[AFR][1000 genomes]
rs73293518	0.81[AFR][1000 genomes]
rs73293521	0.81[AFR][1000 genomes]
rs73293530	0.81[AFR][1000 genomes]
rs73293531	0.81[AFR][1000 genomes]
rs73293538	0.81[AFR][1000 genomes]
rs73293542	0.81[AFR][1000 genomes]
rs73293545	0.81[AFR][1000 genomes]
rs73294819	0.81[AFR][1000 genomes]
rs73294822	0.81[AFR][1000 genomes]
rs73296750	0.81[AFR][1000 genomes]
rs73296755	0.81[AFR][1000 genomes]
rs73296791	0.81[AFR][1000 genomes]
rs73296801	0.81[AFR][1000 genomes]
rs73307989	0.81[AFR][1000 genomes]
rs73308000	0.81[AFR][1000 genomes]
rs73308002	0.81[AFR][1000 genomes]
rs73309914	0.81[AFR][1000 genomes]
rs73309915	0.81[AFR][1000 genomes]
rs73309917	0.81[AFR][1000 genomes]
rs73309927	0.81[AFR][1000 genomes]
rs73309935	0.81[AFR][1000 genomes]
rs73309937	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49573400-49588600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:49573600-49591200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:49574200-49589800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:49574600-49589800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:49574600-49589800	Weak transcription	Left Ventricle	heart
6	chr10:49574800-49589800	Weak transcription	A549	lung
7	chr10:49575200-49588000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:49576600-49589800	Weak transcription	Aorta	Aorta
9	chr10:49577200-49590000	Weak transcription	Ovary	ovary
10	chr10:49585200-49591200	Weak transcription	Fetal Heart	heart
11	chr10:49585600-49589800	Weak transcription	Pancreas	Pancrea
12	chr10:49586200-49591200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:49586400-49589800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:49586400-49592400	Weak transcription	Fetal Kidney	kidney
15	chr10:49586400-49592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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