Variant report

Variant	rs73294822
Chromosome Location	chr10:49560507-49560508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49560371..49562620-chr10:49566484..49568463,2	K562	blood:
2	chr10:49551581..49553904-chr10:49558075..49560720,3	K562	blood:
3	chr10:49559917..49561809-chr10:49572353..49575219,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12265885	1.00[ASN][1000 genomes]
rs55740545	1.00[ASN][1000 genomes]
rs57216848	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57719423	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57796922	1.00[AFR][1000 genomes]
rs58136961	0.81[AFR][1000 genomes]
rs58206495	1.00[AFR][1000 genomes]
rs60303520	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293126	1.00[ASN][1000 genomes]
rs73293156	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293179	0.89[AFR][1000 genomes]
rs73293183	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293187	1.00[AFR][1000 genomes]
rs73293190	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293192	1.00[AFR][1000 genomes]
rs73293201	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293515	1.00[AFR][1000 genomes]
rs73293518	1.00[AFR][1000 genomes]
rs73293521	1.00[AFR][1000 genomes]
rs73293530	1.00[AFR][1000 genomes]
rs73293531	1.00[AFR][1000 genomes]
rs73293532	0.89[AFR][1000 genomes]
rs73293538	1.00[AFR][1000 genomes]
rs73293542	1.00[AFR][1000 genomes]
rs73293545	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293552	0.89[AFR][1000 genomes]
rs73294819	1.00[AFR][1000 genomes]
rs73294824	0.89[AFR][1000 genomes]
rs73294831	0.89[AFR][1000 genomes]
rs73296750	1.00[AFR][1000 genomes]
rs73296755	1.00[AFR][1000 genomes]
rs73296791	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73296794	0.89[AFR][1000 genomes]
rs73296801	1.00[AFR][1000 genomes]
rs73298605	0.89[AFR][1000 genomes]
rs73307982	0.89[AFR][1000 genomes]
rs73307989	1.00[AFR][1000 genomes]
rs73308000	1.00[AFR][1000 genomes]
rs73308002	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73309914	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73309915	1.00[AFR][1000 genomes]
rs73309917	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73309925	0.89[AFR][1000 genomes]
rs73309927	1.00[AFR][1000 genomes]
rs73309935	1.00[AFR][1000 genomes]
rs73309937	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv6587	chr10:49526329-49571804	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49542800-49568000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:49543000-49576200	Weak transcription	Right Atrium	heart
3	chr10:49550400-49560800	Weak transcription	Psoas Muscle	Psoas
4	chr10:49552600-49568800	Weak transcription	NHDF-Ad	bronchial
5	chr10:49559600-49568000	Weak transcription	Ovary	ovary
6	chr10:49559600-49572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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