Variant report

Variant	rs73294831
Chromosome Location	chr10:49568892-49568893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49528793..49531665-chr10:49568295..49570746,2	K562	blood:
2	chr10:49565426..49568203-chr10:49568307..49571165,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs57719423	0.89[AFR][1000 genomes]
rs57796922	0.89[AFR][1000 genomes]
rs58206495	0.89[AFR][1000 genomes]
rs60303520	0.89[AFR][1000 genomes]
rs73293123	0.89[AFR][1000 genomes]
rs73293137	0.89[AFR][1000 genomes]
rs73293144	0.89[AFR][1000 genomes]
rs73293156	0.89[AFR][1000 genomes]
rs73293179	1.00[AFR][1000 genomes]
rs73293183	0.89[AFR][1000 genomes]
rs73293187	0.89[AFR][1000 genomes]
rs73293190	0.89[AFR][1000 genomes]
rs73293192	0.89[AFR][1000 genomes]
rs73293201	0.89[AFR][1000 genomes]
rs73293515	0.89[AFR][1000 genomes]
rs73293518	0.89[AFR][1000 genomes]
rs73293521	0.89[AFR][1000 genomes]
rs73293530	0.89[AFR][1000 genomes]
rs73293531	0.89[AFR][1000 genomes]
rs73293532	1.00[AFR][1000 genomes]
rs73293538	0.89[AFR][1000 genomes]
rs73293542	0.89[AFR][1000 genomes]
rs73293545	0.89[AFR][1000 genomes]
rs73293552	1.00[AFR][1000 genomes]
rs73293556	0.89[AFR][1000 genomes]
rs73294819	0.89[AFR][1000 genomes]
rs73294822	0.89[AFR][1000 genomes]
rs73294824	1.00[AFR][1000 genomes]
rs73296750	0.89[AFR][1000 genomes]
rs73296755	0.89[AFR][1000 genomes]
rs73296791	0.89[AFR][1000 genomes]
rs73296794	1.00[AFR][1000 genomes]
rs73296801	0.89[AFR][1000 genomes]
rs73298605	1.00[AFR][1000 genomes]
rs73307982	1.00[AFR][1000 genomes]
rs73307989	0.89[AFR][1000 genomes]
rs73308000	0.89[AFR][1000 genomes]
rs73308002	0.89[AFR][1000 genomes]
rs73309914	0.89[AFR][1000 genomes]
rs73309915	0.89[AFR][1000 genomes]
rs73309917	0.89[AFR][1000 genomes]
rs73309925	1.00[AFR][1000 genomes]
rs73309927	0.89[AFR][1000 genomes]
rs73309935	0.89[AFR][1000 genomes]
rs73309937	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	nsv6587	chr10:49526329-49571804	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49543000-49576200	Weak transcription	Right Atrium	heart
2	chr10:49559600-49572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:49563600-49572000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:49566000-49571800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:49566000-49573200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:49566400-49580000	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:49566800-49571800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:49568000-49569000	Flanking Active TSS	Fetal Heart	heart
9	chr10:49568000-49569600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:49568000-49571200	Weak transcription	Liver	Liver
11	chr10:49568200-49573000	Weak transcription	Brain Anterior Caudate	brain
12	chr10:49568400-49569000	Enhancers	HSMM	muscle
13	chr10:49568400-49569400	Enhancers	K562	blood
14	chr10:49568400-49569800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr10:49568400-49570200	Enhancers	Fetal Lung	lung
16	chr10:49568600-49569400	Enhancers	Rectal Smooth Muscle	rectum
17	chr10:49568600-49570200	Enhancers	HUVEC	blood vessel
18	chr10:49568600-49571600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr10:49568600-49582000	Weak transcription	Psoas Muscle	Psoas
20	chr10:49568800-49569200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:49568800-49569400	Enhancers	NHDF-Ad	bronchial
22	chr10:49568800-49571800	Weak transcription	Brain Angular Gyrus	brain
23	chr10:49568800-49571800	Weak transcription	NHLF	lung
24	chr10:49568800-49572000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:49568800-49573200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:49568800-49576400	Weak transcription	Ovary	ovary

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