Variant report

Variant	rs73296794
Chromosome Location	chr10:49592808-49592809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49590873..49596805-chr10:49597234..49602162,8	K562	blood:
2	chr10:49592537..49595481-chr10:49609552..49611055,2	K562	blood:
3	chr10:49584975..49587441-chr10:49590002..49593282,3	K562	blood:
4	chr10:49584866..49587796-chr10:49589937..49592814,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs57719423	0.89[AFR][1000 genomes]
rs57796922	0.89[AFR][1000 genomes]
rs58206495	0.89[AFR][1000 genomes]
rs60303520	0.89[AFR][1000 genomes]
rs73293123	0.89[AFR][1000 genomes]
rs73293137	0.89[AFR][1000 genomes]
rs73293144	0.89[AFR][1000 genomes]
rs73293156	0.89[AFR][1000 genomes]
rs73293179	1.00[AFR][1000 genomes]
rs73293183	0.89[AFR][1000 genomes]
rs73293187	0.89[AFR][1000 genomes]
rs73293190	0.89[AFR][1000 genomes]
rs73293192	0.89[AFR][1000 genomes]
rs73293201	0.89[AFR][1000 genomes]
rs73293515	0.89[AFR][1000 genomes]
rs73293518	0.89[AFR][1000 genomes]
rs73293521	0.89[AFR][1000 genomes]
rs73293530	0.89[AFR][1000 genomes]
rs73293531	0.89[AFR][1000 genomes]
rs73293532	1.00[AFR][1000 genomes]
rs73293538	0.89[AFR][1000 genomes]
rs73293542	0.89[AFR][1000 genomes]
rs73293545	0.89[AFR][1000 genomes]
rs73293552	1.00[AFR][1000 genomes]
rs73293556	0.89[AFR][1000 genomes]
rs73294819	0.89[AFR][1000 genomes]
rs73294822	0.89[AFR][1000 genomes]
rs73294824	1.00[AFR][1000 genomes]
rs73294831	1.00[AFR][1000 genomes]
rs73296750	0.89[AFR][1000 genomes]
rs73296755	0.89[AFR][1000 genomes]
rs73296791	0.89[AFR][1000 genomes]
rs73296801	0.89[AFR][1000 genomes]
rs73298605	1.00[AFR][1000 genomes]
rs73307982	1.00[AFR][1000 genomes]
rs73307989	0.89[AFR][1000 genomes]
rs73308000	0.89[AFR][1000 genomes]
rs73308002	0.89[AFR][1000 genomes]
rs73309914	0.89[AFR][1000 genomes]
rs73309915	0.89[AFR][1000 genomes]
rs73309917	0.89[AFR][1000 genomes]
rs73309925	1.00[AFR][1000 genomes]
rs73309927	0.89[AFR][1000 genomes]
rs73309935	0.89[AFR][1000 genomes]
rs73309937	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49587600-49599600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:49590200-49596400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:49590200-49596800	Weak transcription	Left Ventricle	heart
4	chr10:49590200-49598400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:49590200-49598800	Weak transcription	A549	lung
6	chr10:49590200-49599600	Weak transcription	Pancreas	Pancrea
7	chr10:49590400-49598600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:49590400-49599000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:49591000-49593400	Enhancers	Fetal Intestine Large	intestine
10	chr10:49591200-49593000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:49591200-49593000	Enhancers	K562	blood
12	chr10:49591200-49593200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:49591200-49593200	Enhancers	Fetal Heart	heart
14	chr10:49591200-49595400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:49591400-49599600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:49591800-49597200	Weak transcription	NHDF-Ad	bronchial
17	chr10:49591800-49599000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:49592000-49593400	Enhancers	Ovary	ovary
19	chr10:49592000-49597600	Weak transcription	HUVEC	blood vessel
20	chr10:49592200-49597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:49592400-49593600	Enhancers	Fetal Kidney	kidney
22	chr10:49592400-49597600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:49592600-49593000	Enhancers	Primary hematopoietic stem cells	blood
24	chr10:49592600-49593200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:49592600-49593200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:49592600-49593200	Enhancers	Fetal Lung	lung
27	chr10:49592600-49593600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:49592600-49595800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:49592600-49597400	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr10:49592600-49597600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:49592800-49593000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:49592800-49593000	Enhancers	Lung	lung
33	chr10:49592800-49593000	Enhancers	Right Atrium	heart
34	chr10:49592800-49593200	Enhancers	Osteobl	bone
35	chr10:49592800-49593400	Enhancers	Colon Smooth Muscle	Colon
36	chr10:49592800-49593400	Enhancers	HSMM	muscle
37	chr10:49592800-49593400	Enhancers	HSMMtube	muscle
38	chr10:49592800-49593600	Enhancers	GM12878-XiMat	blood
39	chr10:49592800-49597400	Weak transcription	HMEC	breast

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