Variant report

Variant	rs73309917
Chromosome Location	chr10:49618231-49618232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49615995..49618408-chr10:49619011..49621814,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12265885	1.00[ASN][1000 genomes]
rs55740545	1.00[ASN][1000 genomes]
rs57216848	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57719423	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57796922	1.00[AFR][1000 genomes]
rs58136961	0.81[AFR][1000 genomes]
rs58206495	1.00[AFR][1000 genomes]
rs60303520	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293126	1.00[ASN][1000 genomes]
rs73293156	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293179	0.89[AFR][1000 genomes]
rs73293183	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293187	1.00[AFR][1000 genomes]
rs73293190	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293192	1.00[AFR][1000 genomes]
rs73293201	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293515	1.00[AFR][1000 genomes]
rs73293518	1.00[AFR][1000 genomes]
rs73293521	1.00[AFR][1000 genomes]
rs73293530	1.00[AFR][1000 genomes]
rs73293531	1.00[AFR][1000 genomes]
rs73293532	0.89[AFR][1000 genomes]
rs73293538	1.00[AFR][1000 genomes]
rs73293542	1.00[AFR][1000 genomes]
rs73293545	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293552	0.89[AFR][1000 genomes]
rs73294819	1.00[AFR][1000 genomes]
rs73294822	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73294824	0.89[AFR][1000 genomes]
rs73294831	0.89[AFR][1000 genomes]
rs73296750	1.00[AFR][1000 genomes]
rs73296755	1.00[AFR][1000 genomes]
rs73296791	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73296794	0.89[AFR][1000 genomes]
rs73296801	1.00[AFR][1000 genomes]
rs73298605	0.89[AFR][1000 genomes]
rs73307982	0.89[AFR][1000 genomes]
rs73307989	1.00[AFR][1000 genomes]
rs73308000	1.00[AFR][1000 genomes]
rs73308002	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73309914	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73309915	1.00[AFR][1000 genomes]
rs73309925	0.89[AFR][1000 genomes]
rs73309927	1.00[AFR][1000 genomes]
rs73309935	1.00[AFR][1000 genomes]
rs73309937	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49598600-49619800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:49599200-49622200	Weak transcription	HepG2	liver
3	chr10:49600000-49618600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr10:49600400-49620200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:49606800-49619800	Weak transcription	Fetal Stomach	stomach
6	chr10:49607600-49619400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:49607600-49619600	Weak transcription	Colonic Mucosa	Colon
8	chr10:49607600-49619600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:49607600-49624200	Weak transcription	Gastric	stomach
10	chr10:49607600-49624200	Weak transcription	Lung	lung
11	chr10:49607600-49647800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:49607600-49652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:49607800-49620400	Weak transcription	Stomach Mucosa	stomach
14	chr10:49608000-49645600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:49608200-49619400	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:49608200-49621000	Weak transcription	Small Intestine	intestine
17	chr10:49608200-49634400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:49608600-49620200	Weak transcription	Right Ventricle	heart
19	chr10:49608800-49618600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:49609000-49620000	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:49609000-49620600	Weak transcription	Hela-S3	cervix
22	chr10:49609200-49620000	Weak transcription	GM12878-XiMat	blood
23	chr10:49609200-49620800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:49609400-49618800	Weak transcription	Fetal Brain Male	brain
25	chr10:49609800-49620200	Weak transcription	Brain Angular Gyrus	brain
26	chr10:49609800-49620600	Weak transcription	Brain Substantia Nigra	brain
27	chr10:49611000-49618600	Weak transcription	Fetal Intestine Large	intestine
28	chr10:49611200-49620600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:49612000-49664200	Weak transcription	Thymus	Thymus
30	chr10:49612400-49619600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr10:49612400-49620200	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:49612800-49619600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:49612800-49660200	Weak transcription	Aorta	Aorta
34	chr10:49613400-49619800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:49614400-49618600	Weak transcription	Esophagus	oesophagus
36	chr10:49614400-49619400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:49614600-49622200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr10:49614600-49623000	Weak transcription	Pancreas	Pancrea
39	chr10:49614800-49620600	Weak transcription	Fetal Heart	heart
40	chr10:49614800-49638400	Weak transcription	HUVEC	blood vessel
41	chr10:49615000-49621200	Weak transcription	NHLF	lung
42	chr10:49615000-49622000	Weak transcription	NHEK	skin
43	chr10:49615000-49622600	Weak transcription	HMEC	breast
44	chr10:49615200-49618400	Weak transcription	K562	blood
45	chr10:49615200-49620000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:49615200-49620000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:49615400-49620600	Weak transcription	HSMMtube	muscle
48	chr10:49615600-49620600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:49615800-49618400	Weak transcription	NHDF-Ad	bronchial
50	chr10:49616000-49619600	Strong transcription	Primary B cells from cord blood	blood

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