Variant report

Variant	rs73307982
Chromosome Location	chr10:49600954-49600955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49599866..49602810-chr10:49604615..49606169,2	K562	blood:
2	chr10:49597669..49599901-chr10:49599925..49601637,2	K562	blood:
3	chr10:49513543..49515966-chr10:49598483..49600970,2	K562	blood:
4	chr10:49590873..49596805-chr10:49597234..49602162,8	K562	blood:
5	chr10:49600536..49602318-chr10:49619238..49621122,2	K562	blood:
6	chr10:49598612..49601205-chr10:49623829..49626212,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs57719423	0.89[AFR][1000 genomes]
rs57796922	0.89[AFR][1000 genomes]
rs58206495	0.89[AFR][1000 genomes]
rs60303520	0.89[AFR][1000 genomes]
rs73293123	0.89[AFR][1000 genomes]
rs73293137	0.89[AFR][1000 genomes]
rs73293144	0.89[AFR][1000 genomes]
rs73293156	0.89[AFR][1000 genomes]
rs73293179	1.00[AFR][1000 genomes]
rs73293183	0.89[AFR][1000 genomes]
rs73293187	0.89[AFR][1000 genomes]
rs73293190	0.89[AFR][1000 genomes]
rs73293192	0.89[AFR][1000 genomes]
rs73293201	0.89[AFR][1000 genomes]
rs73293515	0.89[AFR][1000 genomes]
rs73293518	0.89[AFR][1000 genomes]
rs73293521	0.89[AFR][1000 genomes]
rs73293530	0.89[AFR][1000 genomes]
rs73293531	0.89[AFR][1000 genomes]
rs73293532	1.00[AFR][1000 genomes]
rs73293538	0.89[AFR][1000 genomes]
rs73293542	0.89[AFR][1000 genomes]
rs73293545	0.89[AFR][1000 genomes]
rs73293552	1.00[AFR][1000 genomes]
rs73293556	0.89[AFR][1000 genomes]
rs73294819	0.89[AFR][1000 genomes]
rs73294822	0.89[AFR][1000 genomes]
rs73294824	1.00[AFR][1000 genomes]
rs73294831	1.00[AFR][1000 genomes]
rs73296750	0.89[AFR][1000 genomes]
rs73296755	0.89[AFR][1000 genomes]
rs73296791	0.89[AFR][1000 genomes]
rs73296794	1.00[AFR][1000 genomes]
rs73296801	0.89[AFR][1000 genomes]
rs73298605	1.00[AFR][1000 genomes]
rs73307989	0.89[AFR][1000 genomes]
rs73308000	0.89[AFR][1000 genomes]
rs73308002	0.89[AFR][1000 genomes]
rs73309914	0.89[AFR][1000 genomes]
rs73309915	0.89[AFR][1000 genomes]
rs73309917	0.89[AFR][1000 genomes]
rs73309925	1.00[AFR][1000 genomes]
rs73309927	0.89[AFR][1000 genomes]
rs73309935	0.89[AFR][1000 genomes]
rs73309937	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1039508	chr10:49595718-49654403	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49593200-49607600	Weak transcription	Fetal Lung	lung
2	chr10:49595000-49616000	Weak transcription	Primary B cells from cord blood	blood
3	chr10:49596600-49601200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr10:49597600-49601200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:49598200-49606400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:49598400-49601200	Enhancers	Primary T cells from cord blood	blood
7	chr10:49598600-49619800	Weak transcription	Fetal Intestine Small	intestine
8	chr10:49598800-49612800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:49599200-49608200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:49599200-49622200	Weak transcription	HepG2	liver
11	chr10:49599400-49606400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:49599800-49601800	Weak transcription	NHDF-Ad	bronchial
13	chr10:49599800-49606200	Weak transcription	Brain Anterior Caudate	brain
14	chr10:49599800-49606200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr10:49599800-49606800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr10:49599800-49607200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:49599800-49618000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:49600000-49601600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:49600000-49606800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:49600000-49607000	Weak transcription	NHLF	lung
21	chr10:49600000-49607400	Weak transcription	Fetal Thymus	thymus
22	chr10:49600000-49612400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:49600000-49613400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr10:49600000-49613600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr10:49600000-49618600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr10:49600200-49601200	Enhancers	K562	blood
27	chr10:49600200-49606200	Weak transcription	Brain Substantia Nigra	brain
28	chr10:49600200-49607000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:49600200-49612400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:49600200-49617400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:49600200-49618200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:49600400-49601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:49600400-49606200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:49600400-49606400	Weak transcription	Fetal Heart	heart
35	chr10:49600400-49607000	Weak transcription	HMEC	breast
36	chr10:49600400-49607200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:49600400-49607200	Weak transcription	Ovary	ovary
38	chr10:49600400-49607400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr10:49600400-49608000	Weak transcription	Small Intestine	intestine
40	chr10:49600400-49616800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:49600400-49620200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:49600600-49601000	Weak transcription	HSMM	muscle

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