Variant report

Variant	rs58144157
Chromosome Location	chr1:61702203-61702204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:61701605..61703264-chr1:61789061..61791484,2	K562	blood:
2	chr1:61698846..61701799-chr1:61701891..61703968,3	K562	blood:
3	chr1:61701203..61703807-chr1:61704252..61706919,4	K562	blood:
4	chr1:61647828..61650855-chr1:61700131..61703599,3	K562	blood:
5	chr1:61670954..61672679-chr1:61702027..61704538,2	K562	blood:
6	chr1:61649257..61651424-chr1:61700130..61703599,3	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57855706	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086704	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090325	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090343	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090356	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849929	chr1:61684084-61714142	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv994970	chr1:61693951-62199657	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1006142	chr1:61696142-62119763	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv534980	chr1:61696142-62119763	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv916868	chr1:61700430-62119762	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1001052	chr1:61702011-62090670	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:61680000-61720200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:61682000-61706800	Weak transcription	Gastric	stomach
3	chr1:61692600-61703400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:61692800-61706800	Weak transcription	Fetal Lung	lung
5	chr1:61692800-61707000	Weak transcription	Fetal Stomach	stomach
6	chr1:61692800-61707200	Weak transcription	Pancreas	Pancrea
7	chr1:61693000-61704000	Weak transcription	Right Atrium	heart
8	chr1:61693000-61706800	Weak transcription	Brain Angular Gyrus	brain
9	chr1:61693000-61706800	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:61694000-61706800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:61694200-61703200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:61694200-61703200	Weak transcription	HMEC	breast
13	chr1:61694200-61703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:61694200-61703600	Weak transcription	Brain Germinal Matrix	brain
15	chr1:61694200-61706800	Weak transcription	Adipose Nuclei	Adipose
16	chr1:61694200-61707000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr1:61694400-61703600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:61696400-61703200	Weak transcription	A549	lung
19	chr1:61696600-61703200	Weak transcription	Brain Substantia Nigra	brain
20	chr1:61696600-61706800	Weak transcription	Right Ventricle	heart
21	chr1:61696600-61707200	Weak transcription	Left Ventricle	heart
22	chr1:61696800-61707000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:61696800-61707200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr1:61696800-61707200	Weak transcription	Small Intestine	intestine
25	chr1:61699000-61703800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:61699200-61703400	Weak transcription	Fetal Kidney	kidney
27	chr1:61699400-61703200	Weak transcription	Liver	Liver
28	chr1:61699400-61706800	Weak transcription	HepG2	liver
29	chr1:61699600-61703600	Weak transcription	Brain Anterior Caudate	brain
30	chr1:61699600-61703600	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:61699600-61704000	Enhancers	K562	blood
32	chr1:61700600-61703600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:61700800-61703600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:61700800-61707400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr1:61701600-61702400	Enhancers	Fetal Heart	heart
36	chr1:61701600-61704400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:61701600-61704600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr1:61701600-61705000	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr1:61701600-61706200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr1:61701600-61706200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr1:61701600-61707200	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr1:61702000-61703400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:61702000-61704000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr1:61702200-61702600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:61702200-61703400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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