Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10497322	0.97[EUR][1000 genomes]
rs10497324	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12622076	0.83[EUR][1000 genomes]
rs1564385	0.97[EUR][1000 genomes]
rs16853307	0.91[EUR][1000 genomes]
rs16853313	0.97[EUR][1000 genomes]
rs16853367	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16853424	0.81[EUR][1000 genomes]
rs3749005	0.97[EUR][1000 genomes]
rs57877625	0.83[EUR][1000 genomes]
rs58432165	0.97[EUR][1000 genomes]
rs61335281	0.97[EUR][1000 genomes]
rs61607968	0.91[EUR][1000 genomes]
rs61748633	0.97[EUR][1000 genomes]
rs73012071	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73012082	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73012092	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73012102	0.91[EUR][1000 genomes]
rs73029719	0.87[EUR][1000 genomes]
rs73029727	0.97[EUR][1000 genomes]
rs73029736	0.97[EUR][1000 genomes]
rs73029754	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168151400-168153200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:168151400-168163600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:168151600-168152800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:168151800-168153600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr2:168151800-168154000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:168152000-168155600	Weak transcription	Brain Anterior Caudate	brain
7	chr2:168152000-168174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:168152200-168153200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr2:168152400-168152800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr2:168152400-168153000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr2:168152600-168152800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:168152600-168152800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr2:168152600-168154000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:168152600-168160400	Weak transcription	Psoas Muscle	Psoas
15	chr2:168152600-168167000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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