Variant report

Variant	rs61335281
Chromosome Location	chr2:168109911-168109912
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10497322	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10497324	0.88[EUR][1000 genomes]
rs12622076	0.86[EUR][1000 genomes]
rs1564385	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16853307	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16853313	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853367	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749005	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57877625	0.86[EUR][1000 genomes]
rs58178589	0.97[EUR][1000 genomes]
rs58432165	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61607968	0.88[EUR][1000 genomes]
rs61748633	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73012071	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73012082	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73012092	0.88[EUR][1000 genomes]
rs73012102	0.88[EUR][1000 genomes]
rs73029719	0.91[EUR][1000 genomes]
rs73029720	0.80[EUR][1000 genomes]
rs73029727	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73029736	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73029754	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583591	chr2:168037489-168132892	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv979347	chr2:168092753-168141678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
4	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168056800-168114000	Weak transcription	Psoas Muscle	Psoas
2	chr2:168095800-168112200	Strong transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:168097000-168112200	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:168100200-168115600	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:168104000-168122200	Weak transcription	Left Ventricle	heart
6	chr2:168109200-168110000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:168109200-168110000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr2:168109200-168110000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr2:168109400-168110000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:168109400-168111200	Enhancers	Stomach Mucosa	stomach
11	chr2:168109600-168110000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:168109600-168110000	Enhancers	NH-A	brain
13	chr2:168109800-168110000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:168109800-168110000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:168109800-168111400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:168109800-168112000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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