Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168135885..168137977-chr2:168139008..168140759,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10497322	0.88[EUR][1000 genomes]
rs10497324	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12622076	0.92[EUR][1000 genomes]
rs1564385	0.88[EUR][1000 genomes]
rs16853307	0.82[EUR][1000 genomes]
rs16853313	0.88[EUR][1000 genomes]
rs16853367	0.88[EUR][1000 genomes]
rs3749005	0.88[EUR][1000 genomes]
rs57877625	0.92[EUR][1000 genomes]
rs58178589	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58432165	0.88[EUR][1000 genomes]
rs61335281	0.88[EUR][1000 genomes]
rs61607968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61748633	0.88[EUR][1000 genomes]
rs73012071	0.88[EUR][1000 genomes]
rs73012082	0.88[EUR][1000 genomes]
rs73012102	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73029720	0.86[EUR][1000 genomes]
rs73029727	0.88[EUR][1000 genomes]
rs73029736	0.88[EUR][1000 genomes]
rs73029754	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv979347	chr2:168092753-168141678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168133000-168143600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:168136800-168139600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:168139200-168139600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr2:168139200-168139600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:168139400-168139600	Enhancers	HUES64 Cell Line	embryonic stem cell

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