Variant report

Variant	rs58190651
Chromosome Location	chr15:59995779-59995780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59992550..59995081-chr15:59995698..59998010,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10152373	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10152431	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10152791	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10519039	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11071468	0.82[AFR][1000 genomes]
rs11071469	0.82[AFR][1000 genomes]
rs12440020	0.85[AFR][1000 genomes]
rs12443242	0.85[AFR][1000 genomes]
rs12593480	0.82[AFR][1000 genomes]
rs12594677	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12903647	0.81[AFR][1000 genomes]
rs12907554	0.82[AFR][1000 genomes]
rs13379702	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13380147	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1552031	0.84[AFR][1000 genomes]
rs16941645	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16941648	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17236804	0.85[AFR][1000 genomes]
rs2307272	0.84[AFR][1000 genomes]
rs2307275	0.83[AFR][1000 genomes]
rs3894007	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4533213	0.84[AFR][1000 genomes]
rs6151442	0.83[AFR][1000 genomes]
rs6151446	0.83[AFR][1000 genomes]
rs6151447	0.83[AFR][1000 genomes]
rs6151448	0.83[AFR][1000 genomes]
rs6151449	0.83[AFR][1000 genomes]
rs6151450	0.83[AFR][1000 genomes]
rs6151458	0.84[AFR][1000 genomes]
rs6151460	0.84[AFR][1000 genomes]
rs6151461	0.82[AFR][1000 genomes]
rs6151462	0.83[AFR][1000 genomes]
rs6151467	0.83[AFR][1000 genomes]
rs6151470	0.84[AFR][1000 genomes]
rs6151474	0.84[AFR][1000 genomes]
rs6151477	0.83[AFR][1000 genomes]
rs6151491	0.85[AFR][1000 genomes]
rs6151494	0.85[AFR][1000 genomes]
rs6151496	0.85[AFR][1000 genomes]
rs6151501	0.84[AFR][1000 genomes]
rs6151503	0.82[AFR][1000 genomes]
rs6151504	0.84[AFR][1000 genomes]
rs6151532	0.82[AFR][1000 genomes]
rs6151533	0.82[AFR][1000 genomes]
rs6151535	0.82[AFR][1000 genomes]
rs6151536	0.82[AFR][1000 genomes]
rs67820349	0.82[AFR][1000 genomes]
rs722163	0.84[AFR][1000 genomes]
rs722164	0.83[AFR][1000 genomes]
rs72625734	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72625735	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72625736	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs728037	0.83[AFR][1000 genomes]
rs728038	0.82[AFR][1000 genomes]
rs74017838	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8025415	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8026680	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8027353	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8027389	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8027415	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59989800-59998400	Enhancers	Hela-S3	cervix
2	chr15:59992800-59996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:59993000-59998000	Weak transcription	HMEC	breast
4	chr15:59993600-59995800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:59994400-59996600	Enhancers	A549	lung
6	chr15:59994400-59997800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:59994600-59996000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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