Variant report

Variant	rs16941648
Chromosome Location	chr15:59987571-59987572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59986007..59987827-chr15:59988230..59990878,2	MCF-7	breast:
2	chr15:59985971..59988155-chr15:59991640..59994225,2	K562	blood:
3	chr15:59980286..59983504-chr15:59984854..59993428,11	K562	blood:
4	chr15:59981552..59983282-chr15:59987405..59989795,2	K562	blood:

Variant related genes	Relation type
ENSG00000140299	Chromatin interaction
ENSG00000259238	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10152209	0.95[YRI][hapmap]
rs10152373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152414	0.94[YRI][hapmap]
rs10152415	0.95[YRI][hapmap]
rs10152431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152791	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1046053	0.95[YRI][hapmap]
rs10519039	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12594677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12910451	0.83[AFR][1000 genomes]
rs13379702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13380147	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1552031	0.95[YRI][hapmap]
rs16941645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17236804	0.95[YRI][hapmap]
rs1871500	0.95[YRI][hapmap]
rs2306355	0.95[YRI][hapmap]
rs2306357	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2306358	0.83[AFR][1000 genomes]
rs2307275	0.95[YRI][hapmap]
rs3087328	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3894007	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4232	0.85[YRI][hapmap]
rs4774340	0.95[YRI][hapmap]
rs4775195	0.95[YRI][hapmap]
rs4775197	0.90[YRI][hapmap]
rs56141740	0.88[AFR][1000 genomes]
rs58190651	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6151444	0.84[AFR][1000 genomes]
rs6151445	0.84[AFR][1000 genomes]
rs6151446	1.00[YRI][hapmap]
rs6151447	1.00[YRI][hapmap]
rs6151448	1.00[YRI][hapmap]
rs6151449	1.00[YRI][hapmap]
rs6151450	1.00[YRI][hapmap]
rs6151451	0.83[AFR][1000 genomes]
rs6151458	0.95[YRI][hapmap]
rs6151461	0.95[YRI][hapmap]
rs6151462	0.95[YRI][hapmap]
rs6151496	0.95[YRI][hapmap]
rs6151504	0.95[YRI][hapmap]
rs6151529	0.89[YRI][hapmap]
rs6151532	0.87[YRI][hapmap]
rs6151533	0.90[YRI][hapmap]
rs6151535	0.89[YRI][hapmap]
rs6151536	0.89[YRI][hapmap]
rs6151571	0.89[YRI][hapmap]
rs6494131	0.95[YRI][hapmap]
rs6494138	0.82[AFR][1000 genomes]
rs67712565	0.81[AFR][1000 genomes]
rs7162964	0.95[YRI][hapmap]
rs7180408	0.95[YRI][hapmap]
rs7182962	0.94[YRI][hapmap]
rs72625734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72625735	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72625736	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74017838	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs754641	0.80[AFR][1000 genomes]
rs754642	0.83[AFR][1000 genomes]
rs754643	0.81[AFR][1000 genomes]
rs755605	0.83[AFR][1000 genomes]
rs8025415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027353	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027389	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027415	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59986600-59987600	Enhancers	Stomach Mucosa	stomach
2	chr15:59987000-59989800	Weak transcription	A549	lung
3	chr15:59987200-59988200	Weak transcription	Fetal Intestine Large	intestine
4	chr15:59987200-59989000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:59987200-59989800	Weak transcription	Hela-S3	cervix
6	chr15:59987400-59989000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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