Variant report

Variant	rs74017838
Chromosome Location	chr15:59987184-59987185
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59981348..59983178-chr15:59984854..59987246,2	K562	blood:
2	chr15:59986007..59987827-chr15:59988230..59990878,2	MCF-7	breast:
3	chr15:59985971..59988155-chr15:59991640..59994225,2	K562	blood:
4	chr15:59980286..59983504-chr15:59984854..59993428,11	K562	blood:
5	chr15:59980854..59982835-chr15:59985648..59987235,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259238	Chromatin interaction
ENSG00000140299	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10152373	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10152431	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10152791	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10519039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11071468	0.83[AFR][1000 genomes]
rs11071469	0.83[AFR][1000 genomes]
rs12440020	0.86[AFR][1000 genomes]
rs12443242	0.86[AFR][1000 genomes]
rs12593480	0.83[AFR][1000 genomes]
rs12594677	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12903647	0.81[AFR][1000 genomes]
rs12907554	0.83[AFR][1000 genomes]
rs13379702	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13380147	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1552031	0.85[AFR][1000 genomes]
rs16941645	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16941648	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17236804	0.86[AFR][1000 genomes]
rs2307272	0.85[AFR][1000 genomes]
rs2307275	0.84[AFR][1000 genomes]
rs3894007	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4533213	0.85[AFR][1000 genomes]
rs58190651	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6151442	0.84[AFR][1000 genomes]
rs6151446	0.84[AFR][1000 genomes]
rs6151447	0.84[AFR][1000 genomes]
rs6151448	0.84[AFR][1000 genomes]
rs6151449	0.84[AFR][1000 genomes]
rs6151450	0.84[AFR][1000 genomes]
rs6151458	0.85[AFR][1000 genomes]
rs6151459	0.80[AFR][1000 genomes]
rs6151460	0.85[AFR][1000 genomes]
rs6151461	0.83[AFR][1000 genomes]
rs6151462	0.84[AFR][1000 genomes]
rs6151467	0.84[AFR][1000 genomes]
rs6151470	0.85[AFR][1000 genomes]
rs6151474	0.85[AFR][1000 genomes]
rs6151477	0.84[AFR][1000 genomes]
rs6151491	0.86[AFR][1000 genomes]
rs6151494	0.86[AFR][1000 genomes]
rs6151496	0.86[AFR][1000 genomes]
rs6151501	0.85[AFR][1000 genomes]
rs6151503	0.83[AFR][1000 genomes]
rs6151504	0.85[AFR][1000 genomes]
rs6151529	0.81[AFR][1000 genomes]
rs6151532	0.83[AFR][1000 genomes]
rs6151533	0.83[AFR][1000 genomes]
rs6151535	0.83[AFR][1000 genomes]
rs6151536	0.83[AFR][1000 genomes]
rs67820349	0.83[AFR][1000 genomes]
rs722163	0.85[AFR][1000 genomes]
rs722164	0.84[AFR][1000 genomes]
rs72625734	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625735	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72625736	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs728037	0.84[AFR][1000 genomes]
rs728038	0.83[AFR][1000 genomes]
rs8025415	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8026680	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8027353	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8027389	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8027415	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59982600-59987200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr15:59986600-59987600	Enhancers	Stomach Mucosa	stomach
3	chr15:59986800-59987200	Enhancers	Fetal Intestine Large	intestine
4	chr15:59986800-59987200	Enhancers	Hela-S3	cervix
5	chr15:59987000-59989800	Weak transcription	A549	lung

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