Variant report

Variant	rs581947
Chromosome Location	chr6:161365629-161365630
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:161360024..161362561-chr6:161364378..161365913,2	MCF-7	breast:
2	chr6:161358647..161361913-chr6:161364919..161367564,3	K562	blood:
3	chr6:161362872..161367165-chr6:161367890..161370793,5	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1247294	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247298	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247299	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1247300	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247302	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247305	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247307	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1247308	0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs1247309	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1247310	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247312	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1247313	1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247316	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247317	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247318	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247319	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247320	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247321	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247322	0.93[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247323	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247325	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1247326	0.87[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs1247327	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1247328	0.83[ASN][1000 genomes]
rs1247329	0.82[ASN][1000 genomes]
rs1247330	0.93[CHB][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap]
rs1247360	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247361	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247362	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247363	0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247364	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247365	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1663025	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2465834	0.81[JPT][hapmap]
rs2465876	0.93[JPT][hapmap]
rs2465877	0.93[JPT][hapmap]
rs2489955	0.92[CHD][hapmap];0.80[GIH][hapmap];0.93[JPT][hapmap]
rs2489956	0.93[JPT][hapmap]
rs585649	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs591676	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62436898	0.86[ASN][1000 genomes]
rs638141	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs687701	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs935182	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs935183	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9364580	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv349125	chr6:161364230-161373035	Enhancers Strong transcription Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161361600-161372200	Weak transcription	Esophagus	oesophagus
2	chr6:161365200-161372200	Weak transcription	Pancreas	Pancrea
3	chr6:161365400-161374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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