Variant report

Variant	rs62436898
Chromosome Location	chr6:161333033-161333034
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161323886..161325793-chr6:161330752..161333163,2	K562	blood:
2	chr6:161282793..161285621-chr6:161332343..161335165,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11970528	0.81[ASN][1000 genomes]
rs1247294	0.94[ASN][1000 genomes]
rs1247298	0.94[ASN][1000 genomes]
rs1247299	0.94[ASN][1000 genomes]
rs1247300	0.94[ASN][1000 genomes]
rs1247302	0.94[ASN][1000 genomes]
rs1247305	0.96[ASN][1000 genomes]
rs1247307	0.95[ASN][1000 genomes]
rs1247309	0.95[ASN][1000 genomes]
rs1247310	0.96[ASN][1000 genomes]
rs1247312	0.95[ASN][1000 genomes]
rs1247313	0.96[ASN][1000 genomes]
rs1247316	0.96[ASN][1000 genomes]
rs1247317	0.96[ASN][1000 genomes]
rs1247318	0.96[ASN][1000 genomes]
rs1247319	0.96[ASN][1000 genomes]
rs1247320	0.96[ASN][1000 genomes]
rs1247321	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1247322	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1247323	0.96[ASN][1000 genomes]
rs1247325	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1247326	0.85[ASN][1000 genomes]
rs1247327	0.87[ASN][1000 genomes]
rs1247328	0.87[ASN][1000 genomes]
rs1247329	0.86[ASN][1000 genomes]
rs1247330	0.83[ASN][1000 genomes]
rs1247360	0.94[ASN][1000 genomes]
rs1247361	0.94[ASN][1000 genomes]
rs1247362	0.94[ASN][1000 genomes]
rs1247363	0.94[ASN][1000 genomes]
rs1247364	0.94[ASN][1000 genomes]
rs1247365	0.94[ASN][1000 genomes]
rs1663025	0.93[ASN][1000 genomes]
rs1937474	0.93[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2465870	0.81[ASN][1000 genomes]
rs2465876	0.82[AMR][1000 genomes]
rs2465877	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2465878	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs581947	0.86[ASN][1000 genomes]
rs585649	0.87[ASN][1000 genomes]
rs591676	0.86[ASN][1000 genomes]
rs638141	0.87[ASN][1000 genomes]
rs687701	0.87[ASN][1000 genomes]
rs935182	0.94[ASN][1000 genomes]
rs935183	0.96[ASN][1000 genomes]
rs9355851	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9364580	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161321200-161336600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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