Variant report

Variant	rs638141
Chromosome Location	chr6:161361888-161361889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161358647..161361913-chr6:161364919..161367564,3	K562	blood:
2	chr6:161360024..161362561-chr6:161364378..161365913,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1247294	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247298	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247299	0.93[ASN][1000 genomes]
rs1247300	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247302	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247305	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247307	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247309	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247310	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247312	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1247313	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247316	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247317	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247318	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247319	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247320	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247321	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247322	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247323	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1247325	0.82[ASN][1000 genomes]
rs1247326	0.82[ASN][1000 genomes]
rs1247327	0.84[ASN][1000 genomes]
rs1247328	0.84[ASN][1000 genomes]
rs1247329	0.83[ASN][1000 genomes]
rs1247330	0.80[ASN][1000 genomes]
rs1247360	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247361	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247362	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247363	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247364	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1247365	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1663025	0.87[ASN][1000 genomes]
rs581947	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs585649	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591676	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62436898	0.87[ASN][1000 genomes]
rs687701	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935182	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs935183	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161359800-161365400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:161361600-161372200	Weak transcription	Esophagus	oesophagus

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