Variant report

Variant	rs58202885
Chromosome Location	chr4:3058906-3058907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11935128	1.00[AMR][1000 genomes]
rs11947255	1.00[AMR][1000 genomes]
rs34854780	1.00[AMR][1000 genomes]
rs35248769	1.00[AMR][1000 genomes]
rs35492582	1.00[AMR][1000 genomes]
rs35970030	1.00[AMR][1000 genomes]
rs41264719	1.00[AMR][1000 genomes]
rs41264741	1.00[AMR][1000 genomes]
rs56733257	1.00[AMR][1000 genomes]
rs57294059	1.00[AMR][1000 genomes]
rs57346236	1.00[AMR][1000 genomes]
rs57447128	1.00[AMR][1000 genomes]
rs57779369	1.00[AMR][1000 genomes]
rs57812385	1.00[AMR][1000 genomes]
rs58036497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58376060	1.00[AMR][1000 genomes]
rs58643792	1.00[AMR][1000 genomes]
rs58782413	1.00[AMR][1000 genomes]
rs58966302	1.00[AMR][1000 genomes]
rs58998372	1.00[AMR][1000 genomes]
rs6813002	1.00[AMR][1000 genomes]
rs6813023	1.00[AMR][1000 genomes]
rs6826590	1.00[AMR][1000 genomes]
rs6832730	1.00[AMR][1000 genomes]
rs6845680	1.00[AMR][1000 genomes]
rs73073038	1.00[AMR][1000 genomes]
rs73073070	1.00[AMR][1000 genomes]
rs73074803	1.00[AMR][1000 genomes]
rs73074829	1.00[AMR][1000 genomes]
rs73074831	1.00[AMR][1000 genomes]
rs73074857	1.00[AMR][1000 genomes]
rs73074859	1.00[AMR][1000 genomes]
rs73084115	1.00[AMR][1000 genomes]
rs73086132	1.00[AMR][1000 genomes]
rs73088165	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3048200-3075200	Weak transcription	Right Atrium	heart
2	chr4:3049600-3074800	Weak transcription	Lung	lung
3	chr4:3053800-3064600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:3058200-3060000	Weak transcription	Primary B cells from cord blood	blood
5	chr4:3058200-3060400	Weak transcription	Adipose Nuclei	Adipose
6	chr4:3058200-3075200	Weak transcription	Psoas Muscle	Psoas
7	chr4:3058400-3059600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr4:3058400-3060200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:3058400-3060600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:3058800-3060000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:3058800-3060000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links