Variant report

Variant	rs73073038
Chromosome Location	chr4:3162467-3162468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11935128	1.00[AMR][1000 genomes]
rs11947255	1.00[AMR][1000 genomes]
rs34854780	1.00[AMR][1000 genomes]
rs35492582	1.00[AMR][1000 genomes]
rs35970030	1.00[AMR][1000 genomes]
rs41264719	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41264741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56733257	1.00[AMR][1000 genomes]
rs57294059	1.00[AMR][1000 genomes]
rs57346236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57447128	1.00[AMR][1000 genomes]
rs57779369	1.00[AMR][1000 genomes]
rs57812385	1.00[AMR][1000 genomes]
rs58036497	1.00[AMR][1000 genomes]
rs58202885	1.00[AMR][1000 genomes]
rs58376060	1.00[AMR][1000 genomes]
rs58643792	1.00[AMR][1000 genomes]
rs58782413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58966302	1.00[AMR][1000 genomes]
rs58998372	1.00[AMR][1000 genomes]
rs60921905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6813002	1.00[AMR][1000 genomes]
rs6813023	1.00[AMR][1000 genomes]
rs6826590	1.00[AMR][1000 genomes]
rs6832730	1.00[AMR][1000 genomes]
rs6845680	1.00[AMR][1000 genomes]
rs73073070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73074803	1.00[AMR][1000 genomes]
rs73074829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73074831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73074857	1.00[AMR][1000 genomes]
rs73074859	1.00[AMR][1000 genomes]
rs73074885	0.93[AFR][1000 genomes]
rs73074892	1.00[AMR][1000 genomes]
rs73077119	1.00[AMR][1000 genomes]
rs73084115	1.00[AMR][1000 genomes]
rs73086132	1.00[AMR][1000 genomes]
rs73088165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	nsv461164	chr4:3149016-3215835	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv593439	chr4:3149016-3215835	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3088200-3164200	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr4:3097400-3163800	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:3098000-3162600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:3108600-3163000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr4:3108800-3164600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:3114600-3292400	Weak transcription	Right Atrium	heart
7	chr4:3114800-3162800	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:3115800-3162800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:3125200-3163000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:3125200-3163200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:3126800-3164400	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:3127000-3164400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:3127200-3163400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:3127200-3163400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:3127200-3163400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr4:3127200-3163600	Strong transcription	Fetal Intestine Large	intestine
17	chr4:3127200-3164200	Strong transcription	Fetal Muscle Leg	muscle
18	chr4:3127200-3164400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr4:3131200-3162600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:3137800-3163400	Strong transcription	Liver	Liver
21	chr4:3139600-3164800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr4:3145600-3164600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:3145800-3164000	Strong transcription	Adipose Nuclei	Adipose
24	chr4:3145800-3239200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr4:3146000-3163400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:3146000-3163600	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:3146200-3162600	Strong transcription	Brain Hippocampus Middle	brain
28	chr4:3146200-3163400	Strong transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:3146200-3164400	Strong transcription	Fetal Thymus	thymus
30	chr4:3146400-3163400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:3146400-3163400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr4:3146400-3163600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:3146400-3163800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr4:3146400-3164400	Strong transcription	Primary T cells from cord blood	blood
35	chr4:3146400-3164800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:3146600-3163600	Strong transcription	Placenta	Placenta
37	chr4:3146600-3164000	Strong transcription	Primary B cells from cord blood	blood
38	chr4:3146600-3164200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr4:3146600-3164800	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:3147000-3164400	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr4:3147200-3164000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:3147800-3164600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:3148000-3163000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:3148000-3164800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr4:3148000-3165600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr4:3148200-3162800	Strong transcription	Brain Cingulate Gyrus	brain
47	chr4:3148400-3162600	Strong transcription	Fetal Stomach	stomach
48	chr4:3148400-3163000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr4:3148600-3163000	Strong transcription	Brain Anterior Caudate	brain
50	chr4:3150000-3164000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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