Variant report

Variant	rs73086132
Chromosome Location	chr4:3068703-3068704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:3062719..3066918-chr4:3067061..3070088,5	MCF-7	breast:
2	chr4:3066825..3068832-chr4:3075011..3077801,2	K562	blood:
3	chr4:3067005..3070247-chr4:3074398..3077648,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251075	Chromatin interaction
ENSG00000197386	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11935128	1.00[AMR][1000 genomes]
rs11947255	1.00[AMR][1000 genomes]
rs34854780	1.00[AMR][1000 genomes]
rs35248769	1.00[AMR][1000 genomes]
rs35492582	1.00[AMR][1000 genomes]
rs35970030	1.00[AMR][1000 genomes]
rs41264719	1.00[AMR][1000 genomes]
rs41264741	1.00[AMR][1000 genomes]
rs56733257	1.00[AMR][1000 genomes]
rs57294059	1.00[AMR][1000 genomes]
rs57346236	1.00[AMR][1000 genomes]
rs57447128	1.00[AMR][1000 genomes]
rs57779369	1.00[AMR][1000 genomes]
rs57812385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58036497	1.00[AMR][1000 genomes]
rs58202885	1.00[AMR][1000 genomes]
rs58376060	1.00[AMR][1000 genomes]
rs58643792	1.00[AMR][1000 genomes]
rs58782413	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58966302	1.00[AMR][1000 genomes]
rs58998372	1.00[AMR][1000 genomes]
rs60921905	1.00[AMR][1000 genomes]
rs6813002	1.00[AMR][1000 genomes]
rs6813023	1.00[AMR][1000 genomes]
rs6826590	1.00[AMR][1000 genomes]
rs6832730	1.00[AMR][1000 genomes]
rs6845680	1.00[AMR][1000 genomes]
rs73073038	1.00[AMR][1000 genomes]
rs73073070	1.00[AMR][1000 genomes]
rs73074803	1.00[AMR][1000 genomes]
rs73074829	1.00[AMR][1000 genomes]
rs73074831	1.00[AMR][1000 genomes]
rs73074857	1.00[AMR][1000 genomes]
rs73074859	1.00[AMR][1000 genomes]
rs73084115	1.00[AMR][1000 genomes]
rs73086119	0.87[AFR][1000 genomes]
rs73088165	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv461163	chr4:2906285-3234980	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	nsv593437	chr4:2906285-3234980	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	esv13277	chr4:3059756-3069436	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3048200-3075200	Weak transcription	Right Atrium	heart
2	chr4:3049600-3074800	Weak transcription	Lung	lung
3	chr4:3058200-3075200	Weak transcription	Psoas Muscle	Psoas
4	chr4:3060800-3074800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:3061000-3074800	Weak transcription	Spleen	Spleen
6	chr4:3061600-3075000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:3062200-3075000	Weak transcription	Adipose Nuclei	Adipose
8	chr4:3062600-3074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:3062600-3074000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:3063800-3075200	Weak transcription	Right Ventricle	heart
11	chr4:3064400-3075000	Weak transcription	Fetal Intestine Small	intestine
12	chr4:3064800-3074800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:3064800-3075000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr4:3065200-3068800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:3067600-3073800	Weak transcription	NHLF	lung
16	chr4:3068400-3068800	Strong transcription	Primary B cells from cord blood	blood

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