Variant report

Variant	rs58211283
Chromosome Location	chr2:211267772-211267773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11884102	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11884181	1.00[AMR][1000 genomes]
rs57335323	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59537642	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60412797	1.00[AMR][1000 genomes]
rs73067660	1.00[AMR][1000 genomes]
rs73067699	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069732	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069733	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069739	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069746	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069754	1.00[AMR][1000 genomes]
rs73069755	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069760	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069766	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069772	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73069773	1.00[AMR][1000 genomes]
rs73069774	1.00[AMR][1000 genomes]
rs73069775	1.00[AMR][1000 genomes]
rs73069776	1.00[AMR][1000 genomes]
rs73069781	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73071705	1.00[AMR][1000 genomes]
rs73073540	1.00[AMR][1000 genomes]
rs73073545	1.00[AMR][1000 genomes]
rs73073546	1.00[AMR][1000 genomes]
rs73073547	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv875767	chr2:211119233-211334647	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211266400-211270000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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