Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr2:211421057-211421494	Hela-S3	cervix:	n/a	n/a
2	MAFK	chr2:211421021-211421266	HepG2	liver:	n/a	n/a
3	STAT3	chr2:211421041-211421519	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr2:211421108-211427880	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr2:211421116-211421355	A549	lung:	n/a	chr2:211421204-211421215
6	GTF2F1	chr2:211421080-211421512	Hela-S3	cervix:	n/a	n/a
7	USF2	chr2:211420976-211421456	Hela-S3	cervix:	n/a	n/a
8	MAFF	chr2:211421100-211421195	HepG2	liver:	n/a	n/a
9	POLR2A	chr2:211420989-211421309	MCF10A-Er-Src	breast:	n/a	n/a
10	MAFK	chr2:211421028-211421179	HepG2	liver:	n/a	n/a
11	RFX5	chr2:211421109-211421465	Hela-S3	cervix:	n/a	n/a
12	MAFK	chr2:211420957-211421889	Hela-S3	cervix:	n/a	n/a
13	MAX	chr2:211421023-211421427	Hela-S3	cervix:	n/a	chr2:211421023-211421034
14	RCOR1	chr2:211421068-211421460	Hela-S3	cervix:	n/a	n/a
15	EP300	chr2:211421030-211422659	Hela-S3	cervix:	n/a	chr2:211422273-211422287 chr2:211421201-211421215
16	CEBPB	chr2:211421014-211421485	Hela-S3	cervix:	n/a	chr2:211421204-211421215
17	TCF7L2	chr2:211421016-211421634	Hela-S3	cervix:	n/a	chr2:211421135-211421151 chr2:211421138-211421147 chr2:211421135-211421151
18	POLR2A	chr2:211421004-211422107	Hela-S3	cervix:	n/a	n/a
19	TBP	chr2:211421054-211424852	Hela-S3	cervix:	n/a	n/a
20	MAZ	chr2:211421058-211421510	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
CPS1	TF binding region

rSNPs within LD-proxies of this variant (count:27)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211412000-211422400	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:211414000-211421200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:211416800-211425800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:211418200-211424400	Genic enhancers	Fetal Intestine Large	intestine
5	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:211419600-211423800	Enhancers	Fetal Intestine Small	intestine
7	chr2:211420400-211422000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr2:211421000-211421200	Flanking Active TSS	Liver	Liver
9	chr2:211421000-211421200	Flanking Active TSS	Hela-S3	cervix
10	chr2:211421000-211423000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:211421000-211423600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:211421000-211423600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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