Variant report

Variant	rs73073540
Chromosome Location	chr2:211405905-211405906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11884102	1.00[AMR][1000 genomes]
rs11884181	1.00[AMR][1000 genomes]
rs57335323	1.00[AMR][1000 genomes]
rs58211283	1.00[AMR][1000 genomes]
rs59537642	1.00[AMR][1000 genomes]
rs60412797	1.00[AMR][1000 genomes]
rs73067660	1.00[AMR][1000 genomes]
rs73067699	1.00[AMR][1000 genomes]
rs73069732	1.00[AMR][1000 genomes]
rs73069733	1.00[AMR][1000 genomes]
rs73069739	1.00[AMR][1000 genomes]
rs73069746	1.00[AMR][1000 genomes]
rs73069754	1.00[AMR][1000 genomes]
rs73069755	1.00[AMR][1000 genomes]
rs73069756	1.00[AMR][1000 genomes]
rs73069760	1.00[AMR][1000 genomes]
rs73069766	1.00[AMR][1000 genomes]
rs73069772	1.00[AMR][1000 genomes]
rs73069773	1.00[AMR][1000 genomes]
rs73069774	1.00[AMR][1000 genomes]
rs73069775	1.00[AMR][1000 genomes]
rs73069776	1.00[AMR][1000 genomes]
rs73069781	1.00[AMR][1000 genomes]
rs73071705	1.00[AMR][1000 genomes]
rs73073545	1.00[AMR][1000 genomes]
rs73073546	1.00[AMR][1000 genomes]
rs73073547	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211404200-211406600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:211404400-211406200	Flanking Active TSS	Liver	Liver
3	chr2:211405000-211406600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:211405000-211408000	Enhancers	Fetal Intestine Small	intestine
5	chr2:211405000-211409800	Enhancers	Fetal Intestine Large	intestine
6	chr2:211405200-211406000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:211405200-211406200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:211405200-211406600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:211405400-211406000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:211405400-211406400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:211405600-211406000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:211405600-211406200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:211405600-211406400	Enhancers	Brain Angular Gyrus	brain
14	chr2:211405600-211406400	Enhancers	Brain Hippocampus Middle	brain
15	chr2:211405600-211406600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:211405600-211406600	Flanking Active TSS	HepG2	liver
17	chr2:211405600-211406800	Enhancers	Duodenum Mucosa	Duodenum
18	chr2:211405600-211406800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr2:211405600-211406800	Enhancers	Fetal Lung	lung
20	chr2:211405800-211406000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr2:211405800-211406200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr2:211405800-211406200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr2:211405800-211406200	Enhancers	Fetal Stomach	stomach
24	chr2:211405800-211406400	Enhancers	Brain Germinal Matrix	brain
25	chr2:211405800-211406600	Enhancers	Brain Substantia Nigra	brain
26	chr2:211405800-211407800	Enhancers	Pancreas	Pancrea

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