Variant report

Variant	rs58228125
Chromosome Location	chr2:50304330-50304331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11897655	1.00[AMR][1000 genomes]
rs59133746	1.00[AMR][1000 genomes]
rs60693233	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874678	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874680	1.00[AMR][1000 genomes]
rs72874682	1.00[AMR][1000 genomes]
rs72878133	1.00[AMR][1000 genomes]
rs72878177	1.00[AMR][1000 genomes]
rs72881248	1.00[AMR][1000 genomes]
rs72881277	1.00[AMR][1000 genomes]
rs72881278	1.00[AMR][1000 genomes]
rs72884140	1.00[AMR][1000 genomes]
rs72884144	1.00[AMR][1000 genomes]
rs72885854	1.00[AMR][1000 genomes]
rs72885858	1.00[AMR][1000 genomes]
rs72885864	1.00[AMR][1000 genomes]
rs72885885	1.00[AMR][1000 genomes]
rs72885888	1.00[AMR][1000 genomes]
rs72885889	1.00[AMR][1000 genomes]
rs72885894	1.00[AMR][1000 genomes]
rs72885897	1.00[AMR][1000 genomes]
rs72885898	1.00[AMR][1000 genomes]
rs72887723	1.00[AMR][1000 genomes]
rs72887744	1.00[AMR][1000 genomes]
rs72887745	1.00[AMR][1000 genomes]
rs72887746	1.00[AMR][1000 genomes]
rs72887830	1.00[AMR][1000 genomes]
rs72887834	1.00[AMR][1000 genomes]
rs72887861	1.00[AMR][1000 genomes]
rs72887901	1.00[AMR][1000 genomes]
rs72889504	1.00[AMR][1000 genomes]
rs72889507	1.00[AMR][1000 genomes]
rs72889549	1.00[AMR][1000 genomes]
rs72891409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50303800-50304800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:50304000-50304600	Enhancers	Brain Germinal Matrix	brain
3	chr2:50304200-50304400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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