Variant report
| Variant | rs72884140 |
|---|---|
| Chromosome Location | chr2:50117011-50117012 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr2:50116895-50117124 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000212580 | TF binding region |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11897655 | 1.00[AMR][1000 genomes] |
| rs11902095 | 1.00[AMR][1000 genomes] |
| rs58228125 | 1.00[AMR][1000 genomes] |
| rs59133746 | 1.00[AMR][1000 genomes] |
| rs60693233 | 1.00[AMR][1000 genomes] |
| rs72884144 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72885854 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72885858 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72885864 | 1.00[AMR][1000 genomes] |
| rs72885885 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72885888 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72885889 | 1.00[AMR][1000 genomes] |
| rs72885894 | 1.00[AMR][1000 genomes] |
| rs72885897 | 1.00[AMR][1000 genomes] |
| rs72885898 | 1.00[AMR][1000 genomes] |
| rs72887830 | 1.00[AMR][1000 genomes] |
| rs72887834 | 1.00[AMR][1000 genomes] |
| rs72887861 | 1.00[AMR][1000 genomes] |
| rs72887901 | 1.00[AMR][1000 genomes] |
| rs72889504 | 1.00[AMR][1000 genomes] |
| rs72889507 | 1.00[AMR][1000 genomes] |
| rs72889549 | 1.00[AMR][1000 genomes] |
| rs72891409 | 1.00[AMR][1000 genomes] |
| rs72891421 | 1.00[AMR][1000 genomes] |
| rs72891431 | 1.00[AMR][1000 genomes] |
| rs72891432 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388948 | chr2:50092667-50602681 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3399511 | chr2:50092687-50602651 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv979004 | chr2:50092805-50120656 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:50115800-50117800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr2:50116200-50117800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
