Variant report

Variant	rs59133746
Chromosome Location	chr2:50256793-50256794
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:49987705..49990073-chr2:50256678..50259583,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11897655	1.00[AMR][1000 genomes]
rs58228125	1.00[AMR][1000 genomes]
rs60693233	1.00[AMR][1000 genomes]
rs72874678	1.00[AMR][1000 genomes]
rs72874680	1.00[AMR][1000 genomes]
rs72874682	1.00[AMR][1000 genomes]
rs72878133	1.00[AMR][1000 genomes]
rs72878177	1.00[AMR][1000 genomes]
rs72881248	1.00[AMR][1000 genomes]
rs72881277	1.00[AMR][1000 genomes]
rs72881278	1.00[AMR][1000 genomes]
rs72884140	1.00[AMR][1000 genomes]
rs72884144	1.00[AMR][1000 genomes]
rs72885854	1.00[AMR][1000 genomes]
rs72885858	1.00[AMR][1000 genomes]
rs72885864	1.00[AMR][1000 genomes]
rs72885885	1.00[AMR][1000 genomes]
rs72885888	1.00[AMR][1000 genomes]
rs72885889	1.00[AMR][1000 genomes]
rs72885894	1.00[AMR][1000 genomes]
rs72885897	1.00[AMR][1000 genomes]
rs72885898	1.00[AMR][1000 genomes]
rs72887723	1.00[AMR][1000 genomes]
rs72887744	1.00[AMR][1000 genomes]
rs72887745	1.00[AMR][1000 genomes]
rs72887746	1.00[AMR][1000 genomes]
rs72887830	1.00[AMR][1000 genomes]
rs72887834	1.00[AMR][1000 genomes]
rs72887861	1.00[AMR][1000 genomes]
rs72887901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889504	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889507	1.00[AMR][1000 genomes]
rs72889549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72891409	1.00[AMR][1000 genomes]
rs72891421	1.00[AMR][1000 genomes]
rs72891431	1.00[AMR][1000 genomes]
rs72891432	1.00[AMR][1000 genomes]
rs72891470	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv581837	chr2:50230334-50268616	Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1011144	chr2:50231111-50270096	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv915588	chr2:50235306-50268306	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv431002	chr2:50243349-50259749	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1004550	chr2:50250335-50274067	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv581838	chr2:50250758-50274774	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50256200-50257000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:50256600-50256800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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