Variant report

Variant	rs58257684
Chromosome Location	chr8:69757137-69757138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11997644	0.81[ASN][1000 genomes]
rs16935168	0.81[ASN][1000 genomes]
rs16935176	0.81[ASN][1000 genomes]
rs16935210	0.81[ASN][1000 genomes]
rs56118521	0.81[ASN][1000 genomes]
rs57592190	0.81[ASN][1000 genomes]
rs73289410	0.90[EUR][1000 genomes]
rs73683746	0.90[ASN][1000 genomes]
rs73683748	0.81[ASN][1000 genomes]
rs73683749	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69751200-69758600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:69751600-69762800	Weak transcription	Aorta	Aorta
3	chr8:69752400-69757800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:69752800-69757800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:69753000-69757800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:69753400-69758400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:69755200-69760400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:69755400-69758000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr8:69755600-69758400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:69755600-69758800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:69755800-69757200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:69756200-69757600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:69756200-69776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:69756400-69757800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:69756600-69757800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr8:69756800-69757600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:69757000-69757400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:69757000-69758000	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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