Variant report

Variant	rs16935176
Chromosome Location	chr8:69762260-69762261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:69338439..69340713-chr8:69760510..69763451,2	MCF-7	breast:
2	chr8:69611388..69613442-chr8:69760561..69763282,2	MCF-7	breast:
3	chr20:49041524..49044287-chr8:69761729..69764153,2	MCF-7	breast:
4	chr8:69762068..69763713-chr8:70060193..70062538,2	MCF-7	breast:
5	chr8:69762198..69770207-chr8:70021083..70026192,14	MCF-7	breast:
6	chr8:69738712..69740875-chr8:69761908..69763896,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-664D7.4.1-2	chr8:69762186-69762280	ENSG00000254337

No data

Variant related genes	Relation type
ENSG00000238808	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10091250	0.91[ASN][1000 genomes]
rs10091284	0.81[ASN][1000 genomes]
rs10091347	0.81[ASN][1000 genomes]
rs10100825	0.91[ASN][1000 genomes]
rs10101976	0.91[ASN][1000 genomes]
rs10104083	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10104452	0.91[ASN][1000 genomes]
rs11985132	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11989291	1.00[EUR][1000 genomes]
rs11993238	1.00[MEX][hapmap]
rs11997644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334857	1.00[JPT][hapmap]
rs12549168	1.00[CEU][hapmap]
rs12675576	1.00[CEU][hapmap]
rs16919116	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16935112	1.00[CHB][hapmap]
rs16935138	1.00[EUR][1000 genomes]
rs16935142	1.00[EUR][1000 genomes]
rs16935168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935184	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16935210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935336	1.00[CEU][hapmap]
rs41465948	1.00[MEX][hapmap]
rs4474011	0.81[ASN][1000 genomes]
rs4737935	1.00[CEU][hapmap]
rs55711798	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55999027	1.00[EUR][1000 genomes]
rs56118521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57592190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58257684	0.81[ASN][1000 genomes]
rs60141621	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472424	0.91[ASN][1000 genomes]
rs6472427	0.81[ASN][1000 genomes]
rs73273758	0.81[ASN][1000 genomes]
rs73273761	0.81[ASN][1000 genomes]
rs73277058	0.90[ASN][1000 genomes]
rs73277069	1.00[EUR][1000 genomes]
rs73683746	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73683748	1.00[ASN][1000 genomes]
rs73683749	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683752	1.00[EUR][1000 genomes]
rs73683758	0.91[ASN][1000 genomes]
rs7464267	0.81[ASN][1000 genomes]
rs7815951	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7821991	0.91[ASN][1000 genomes]
rs7822932	0.91[ASN][1000 genomes]
rs7825981	0.81[ASN][1000 genomes]
rs7827405	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs7830651	1.00[EUR][1000 genomes]
rs7831860	0.81[ASN][1000 genomes]
rs7832452	0.91[ASN][1000 genomes]
rs7846528	1.00[EUR][1000 genomes]
rs7846617	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv523414	chr8:69762260-69764515	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69751600-69762800	Weak transcription	Aorta	Aorta
2	chr8:69756200-69776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:69757600-69762800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:69759200-69766000	Weak transcription	HSMM	muscle
5	chr8:69759800-69766000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:69760400-69765000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:69760600-69762600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:69762200-69762800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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