Variant report

Variant	rs10104083
Chromosome Location	chr8:69775899-69775900
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69774615..69776136-chr8:69778095..69779612,2	MCF-7	breast:
2	chr8:69764448..69768725-chr8:69769799..69776085,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10091250	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091347	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10095921	0.97[EUR][1000 genomes]
rs10100825	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101976	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104452	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985132	1.00[JPT][hapmap]
rs11997644	0.91[ASN][1000 genomes]
rs12334857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16919116	0.82[ASN][1000 genomes]
rs16935168	0.91[ASN][1000 genomes]
rs16935176	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16935184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935210	0.91[ASN][1000 genomes]
rs4474011	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56118521	0.91[ASN][1000 genomes]
rs57592190	0.91[ASN][1000 genomes]
rs60141621	0.82[ASN][1000 genomes]
rs6472424	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472427	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6981271	0.93[EUR][1000 genomes]
rs6987520	0.82[ASN][1000 genomes]
rs73273774	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73277058	0.82[ASN][1000 genomes]
rs73683746	0.82[ASN][1000 genomes]
rs73683748	0.91[ASN][1000 genomes]
rs73683749	0.91[ASN][1000 genomes]
rs73683758	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7464267	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7815951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821991	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822932	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823746	0.82[ASN][1000 genomes]
rs7825981	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827405	1.00[JPT][hapmap]
rs7831860	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7832452	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838608	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69756200-69776000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:69763000-69778600	Weak transcription	Aorta	Aorta
3	chr8:69772200-69778400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:69772400-69778000	Weak transcription	NHDF-Ad	bronchial
5	chr8:69773200-69782800	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:69774200-69776000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:69774200-69776200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:69774600-69778000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:69775600-69776000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:69775600-69776000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:69775600-69776200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:69775600-69776200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:69775600-69776200	Enhancers	Hela-S3	cervix
14	chr8:69775600-69776200	Enhancers	NHEK	skin
15	chr8:69775600-69778200	Weak transcription	Osteobl	bone
16	chr8:69775800-69776200	Enhancers	HMEC	breast

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