Variant report

Variant	rs10101976
Chromosome Location	chr8:69784133-69784134
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69766441..69769103-chr8:69782417..69786375,4	MCF-7	breast:
2	chr8:69783987..69786216-chr8:69786621..69791485,4	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10091250	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091347	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10095921	0.97[EUR][1000 genomes]
rs10100825	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104452	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985132	1.00[JPT][hapmap]
rs11997644	0.91[ASN][1000 genomes]
rs12334857	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.85[MKK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs16919116	0.82[ASN][1000 genomes]
rs16935168	0.91[ASN][1000 genomes]
rs16935176	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16935184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935210	0.91[ASN][1000 genomes]
rs4474011	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56118521	0.91[ASN][1000 genomes]
rs57592190	0.91[ASN][1000 genomes]
rs60141621	0.82[ASN][1000 genomes]
rs6472424	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472427	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6472428	0.81[EUR][1000 genomes]
rs6981271	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6987520	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73273774	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73277058	0.82[ASN][1000 genomes]
rs73683746	0.82[ASN][1000 genomes]
rs73683748	0.91[ASN][1000 genomes]
rs73683749	0.91[ASN][1000 genomes]
rs73683758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683764	0.83[EUR][1000 genomes]
rs7460149	0.83[EUR][1000 genomes]
rs7464267	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7815951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821207	0.81[EUR][1000 genomes]
rs7821991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823746	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7825981	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827405	1.00[JPT][hapmap]
rs7831860	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7832452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838608	0.98[EUR][1000 genomes]
rs7838741	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69782800-69786600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:69783600-69784600	Weak transcription	Hela-S3	cervix
3	chr8:69783600-69787400	Weak transcription	Fetal Lung	lung
4	chr8:69784000-69784200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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