Variant report

Variant	rs6472428
Chromosome Location	chr8:69824642-69824643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-664D7.4.1-3	chr8:69824038-69825775	ENSG00000253658.1

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10087739	1.00[ASN][1000 genomes]
rs10089897	1.00[ASN][1000 genomes]
rs10090892	1.00[ASN][1000 genomes]
rs10091347	0.81[EUR][1000 genomes]
rs10094648	1.00[ASN][1000 genomes]
rs10096087	1.00[ASN][1000 genomes]
rs10097876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10100825	0.81[EUR][1000 genomes]
rs10101263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10101976	0.81[EUR][1000 genomes]
rs10104083	0.87[CEU][hapmap]
rs10109701	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11778752	1.00[CHB][hapmap]
rs11779221	1.00[ASN][1000 genomes]
rs1317211	1.00[ASN][1000 genomes]
rs16935184	0.87[CEU][hapmap]
rs17389034	1.00[CHB][hapmap]
rs17613697	1.00[ASN][1000 genomes]
rs1863590	1.00[ASN][1000 genomes]
rs28488124	1.00[ASN][1000 genomes]
rs28631008	1.00[ASN][1000 genomes]
rs28700205	1.00[ASN][1000 genomes]
rs28760971	1.00[ASN][1000 genomes]
rs28798408	1.00[ASN][1000 genomes]
rs28893292	1.00[ASN][1000 genomes]
rs2953963	1.00[ASN][1000 genomes]
rs2978225	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2978243	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2978246	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2978247	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs41466649	1.00[ASN][1000 genomes]
rs4265200	1.00[ASN][1000 genomes]
rs60318345	1.00[ASN][1000 genomes]
rs6472424	0.81[EUR][1000 genomes]
rs6472427	0.81[EUR][1000 genomes]
rs6981271	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987520	0.94[EUR][1000 genomes]
rs6991004	1.00[ASN][1000 genomes]
rs7014621	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73273774	0.96[EUR][1000 genomes]
rs73282699	1.00[ASN][1000 genomes]
rs73683758	0.81[EUR][1000 genomes]
rs73683764	0.94[EUR][1000 genomes]
rs7459898	1.00[ASN][1000 genomes]
rs7460149	0.94[EUR][1000 genomes]
rs7815951	0.87[CEU][hapmap]
rs7821207	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821581	1.00[ASN][1000 genomes]
rs7821991	0.81[EUR][1000 genomes]
rs7822932	0.81[EUR][1000 genomes]
rs7823746	0.94[EUR][1000 genomes]
rs7831860	0.81[EUR][1000 genomes]
rs7832452	0.81[EUR][1000 genomes]
rs7837124	1.00[CHB][hapmap]
rs7837210	1.00[ASN][1000 genomes]
rs7838741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69818200-69824800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:69823000-69829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:69824600-69825600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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