Variant report

Variant	rs7460149
Chromosome Location	chr8:69828412-69828413
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10091284	0.80[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10091347	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10095921	0.83[EUR][1000 genomes]
rs10100825	0.83[EUR][1000 genomes]
rs10101976	0.83[EUR][1000 genomes]
rs10104083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11985132	1.00[JPT][hapmap]
rs12334857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16935176	1.00[JPT][hapmap]
rs16935184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4474011	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55711798	0.83[ASN][1000 genomes]
rs6472424	0.83[EUR][1000 genomes]
rs6472427	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6472428	0.94[EUR][1000 genomes]
rs6987520	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7014621	0.96[EUR][1000 genomes]
rs73273758	0.83[ASN][1000 genomes]
rs73273761	0.83[ASN][1000 genomes]
rs73273774	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73683758	0.83[EUR][1000 genomes]
rs73683764	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7464267	0.83[ASN][1000 genomes]
rs7815951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7821207	0.94[EUR][1000 genomes]
rs7821991	0.83[EUR][1000 genomes]
rs7822932	0.83[EUR][1000 genomes]
rs7823746	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7825981	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7827405	1.00[JPT][hapmap]
rs7831860	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7832452	0.83[EUR][1000 genomes]
rs7838608	0.85[EUR][1000 genomes]
rs7838741	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69823000-69829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:69825600-69828800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:69826400-69828600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:69826600-69829200	Weak transcription	Fetal Brain Male	brain
6	chr8:69827200-69829000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:69827200-69830600	Weak transcription	Fetal Brain Female	brain
8	chr8:69827600-69831000	Enhancers	Ovary	ovary
9	chr8:69827800-69834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:69828200-69829600	Enhancers	NHDF-Ad	bronchial
11	chr8:69828200-69830800	Enhancers	Colon Smooth Muscle	Colon
12	chr8:69828400-69829200	Enhancers	Fetal Heart	heart
13	chr8:69828400-69829600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:69828400-69830400	Enhancers	Fetal Lung	lung

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