Variant report

Variant	rs6472427
Chromosome Location	chr8:69802875-69802876
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10091250	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10091284	0.81[ASN][1000 genomes]
rs10091347	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10095921	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10100825	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10101976	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10104083	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10104452	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11997644	0.81[ASN][1000 genomes]
rs16919116	0.90[ASN][1000 genomes]
rs16935168	0.81[ASN][1000 genomes]
rs16935176	0.81[ASN][1000 genomes]
rs16935184	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16935210	0.81[ASN][1000 genomes]
rs4474011	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55711798	0.81[ASN][1000 genomes]
rs56118521	0.81[ASN][1000 genomes]
rs57592190	0.81[ASN][1000 genomes]
rs60141621	0.90[ASN][1000 genomes]
rs6472424	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6472428	0.81[EUR][1000 genomes]
rs6981271	0.97[EUR][1000 genomes]
rs6987520	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73273758	0.81[ASN][1000 genomes]
rs73273761	0.81[ASN][1000 genomes]
rs73273774	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73277058	0.90[ASN][1000 genomes]
rs73683748	0.81[ASN][1000 genomes]
rs73683749	0.81[ASN][1000 genomes]
rs73683758	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73683764	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7460149	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7464267	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815951	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7821207	0.81[EUR][1000 genomes]
rs7821991	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7822932	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7823746	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7825981	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831860	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7832452	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7838608	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7838741	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69797000-69806200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69802400-69803000	Enhancers	Brain Germinal Matrix	brain

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