Variant report

Variant	rs60141621
Chromosome Location	chr8:69824264-69824265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-664D7.4.1-3	chr8:69824038-69825775	ENSG00000253658.1

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10091250	0.82[ASN][1000 genomes]
rs10091284	0.90[ASN][1000 genomes]
rs10091347	0.90[ASN][1000 genomes]
rs10100825	0.82[ASN][1000 genomes]
rs10101976	0.82[ASN][1000 genomes]
rs10104083	0.82[ASN][1000 genomes]
rs10104452	0.82[ASN][1000 genomes]
rs11989291	1.00[EUR][1000 genomes]
rs11997644	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16919116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935138	1.00[EUR][1000 genomes]
rs16935142	1.00[EUR][1000 genomes]
rs16935168	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16935176	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16935184	0.82[ASN][1000 genomes]
rs16935210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4474011	0.90[ASN][1000 genomes]
rs55711798	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55999027	1.00[EUR][1000 genomes]
rs56118521	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57592190	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6472424	0.82[ASN][1000 genomes]
rs6472427	0.90[ASN][1000 genomes]
rs6987520	0.82[ASN][1000 genomes]
rs73273758	0.90[ASN][1000 genomes]
rs73273761	0.90[ASN][1000 genomes]
rs73273774	0.82[ASN][1000 genomes]
rs73277058	1.00[ASN][1000 genomes]
rs73277069	1.00[EUR][1000 genomes]
rs73683746	1.00[EUR][1000 genomes]
rs73683748	0.90[ASN][1000 genomes]
rs73683749	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73683752	1.00[EUR][1000 genomes]
rs73683758	0.82[ASN][1000 genomes]
rs7464267	0.90[ASN][1000 genomes]
rs7815951	0.82[ASN][1000 genomes]
rs7821991	0.82[ASN][1000 genomes]
rs7822932	0.82[ASN][1000 genomes]
rs7823746	0.82[ASN][1000 genomes]
rs7825981	0.90[ASN][1000 genomes]
rs7830651	1.00[EUR][1000 genomes]
rs7831860	0.90[ASN][1000 genomes]
rs7832452	0.82[ASN][1000 genomes]
rs7846528	1.00[EUR][1000 genomes]
rs7846617	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69818200-69824800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:69820800-69824600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:69823000-69829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links