Variant report

Variant	rs16919116
Chromosome Location	chr8:69811303-69811304
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10091250	0.82[ASN][1000 genomes]
rs10091284	0.90[ASN][1000 genomes]
rs10091347	0.90[ASN][1000 genomes]
rs10100825	0.82[ASN][1000 genomes]
rs10101976	0.82[ASN][1000 genomes]
rs10104083	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10104452	0.82[ASN][1000 genomes]
rs11985132	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11989291	1.00[EUR][1000 genomes]
rs11997644	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12334857	1.00[JPT][hapmap]
rs12549168	1.00[CEU][hapmap]
rs12675576	1.00[CEU][hapmap]
rs16935112	1.00[CHB][hapmap]
rs16935138	1.00[EUR][1000 genomes]
rs16935142	1.00[EUR][1000 genomes]
rs16935168	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16935176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16935184	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16935210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16935336	1.00[CEU][hapmap]
rs4474011	0.90[ASN][1000 genomes]
rs4737935	1.00[CEU][hapmap]
rs55711798	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55999027	1.00[EUR][1000 genomes]
rs56118521	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57592190	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60141621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472424	0.82[ASN][1000 genomes]
rs6472427	0.90[ASN][1000 genomes]
rs6987520	0.82[ASN][1000 genomes]
rs73273758	0.90[ASN][1000 genomes]
rs73273761	0.90[ASN][1000 genomes]
rs73273774	0.82[ASN][1000 genomes]
rs73277058	1.00[ASN][1000 genomes]
rs73277069	1.00[EUR][1000 genomes]
rs73683746	1.00[EUR][1000 genomes]
rs73683748	0.90[ASN][1000 genomes]
rs73683749	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73683752	1.00[EUR][1000 genomes]
rs73683758	0.82[ASN][1000 genomes]
rs73683759	0.87[AFR][1000 genomes]
rs7464267	0.90[ASN][1000 genomes]
rs7815951	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7821991	0.82[ASN][1000 genomes]
rs7822932	0.82[ASN][1000 genomes]
rs7823746	0.82[ASN][1000 genomes]
rs7825981	0.90[ASN][1000 genomes]
rs7827405	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7830651	1.00[EUR][1000 genomes]
rs7831860	0.90[ASN][1000 genomes]
rs7832452	0.82[ASN][1000 genomes]
rs7846528	1.00[EUR][1000 genomes]
rs7846617	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69811000-69812000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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