Variant report

Variant	rs6987520
Chromosome Location	chr8:69831792-69831793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69812582..69814228-chr8:69830263..69832137,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10091250	0.82[ASN][1000 genomes]
rs10091347	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10095921	0.83[EUR][1000 genomes]
rs10100825	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10101976	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10104083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10104452	0.82[ASN][1000 genomes]
rs11985132	1.00[JPT][hapmap]
rs12334857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16919116	0.82[ASN][1000 genomes]
rs16935176	1.00[JPT][hapmap]
rs16935184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4474011	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55711798	0.91[ASN][1000 genomes]
rs60141621	0.82[ASN][1000 genomes]
rs6472424	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6472427	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6472428	0.94[EUR][1000 genomes]
rs7014621	0.96[EUR][1000 genomes]
rs73273774	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277058	0.82[ASN][1000 genomes]
rs73683758	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73683764	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7460149	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7464267	0.91[ASN][1000 genomes]
rs7815951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7821207	0.94[EUR][1000 genomes]
rs7821991	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7822932	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7823746	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825981	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827405	1.00[JPT][hapmap]
rs7831860	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7832452	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7838608	0.85[EUR][1000 genomes]
rs7838741	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972251	chr8:69831525-69834628	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69827800-69834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:69828800-69833800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:69829400-69832200	Weak transcription	Osteobl	bone
5	chr8:69829400-69832400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:69829400-69832600	Weak transcription	Aorta	Aorta
7	chr8:69829600-69831800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:69829600-69832000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:69829600-69832000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:69829600-69832000	Weak transcription	NHLF	lung
11	chr8:69829600-69832200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:69829600-69832200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:69829600-69832400	Weak transcription	NHDF-Ad	bronchial
14	chr8:69829800-69832800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:69829800-69833000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:69830000-69831800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:69830800-69832800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:69830800-69833000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:69830800-69837000	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:69831000-69832200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:69831000-69832800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:69831200-69832600	Weak transcription	Fetal Heart	heart
23	chr8:69831200-69837000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:69831600-69832000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:69831600-69832000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:69831600-69839000	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links