Variant report

Variant	rs7823746
Chromosome Location	chr8:69832942-69832943
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69791453..69793746-chr8:69832544..69834116,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10091250	0.82[ASN][1000 genomes]
rs10091347	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10095921	0.83[EUR][1000 genomes]
rs10100825	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10101976	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10104083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10104452	0.82[ASN][1000 genomes]
rs11985132	1.00[JPT][hapmap]
rs12334857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16919116	0.82[ASN][1000 genomes]
rs16935176	1.00[JPT][hapmap]
rs16935184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4474011	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55711798	0.91[ASN][1000 genomes]
rs60141621	0.82[ASN][1000 genomes]
rs6472424	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6472427	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6472428	0.94[EUR][1000 genomes]
rs6987520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014621	0.96[EUR][1000 genomes]
rs73273774	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73277058	0.82[ASN][1000 genomes]
rs73683758	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73683764	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7460149	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7464267	0.91[ASN][1000 genomes]
rs7815951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7821207	0.94[EUR][1000 genomes]
rs7821991	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7822932	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7825981	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7827405	1.00[JPT][hapmap]
rs7831860	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7832452	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7838608	0.85[EUR][1000 genomes]
rs7838741	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972251	chr8:69831525-69834628	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69827800-69834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:69828800-69833800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:69829800-69833000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:69830800-69833000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:69830800-69837000	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:69831200-69837000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:69831600-69839000	Enhancers	HSMM	muscle
9	chr8:69831800-69834600	Enhancers	HSMMtube	muscle
10	chr8:69831800-69835200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:69832000-69833200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:69832000-69834600	Enhancers	NH-A	brain
13	chr8:69832000-69835000	Enhancers	NHLF	lung
14	chr8:69832000-69838200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:69832200-69834000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:69832200-69837000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:69832200-69840600	Enhancers	Osteobl	bone
18	chr8:69832400-69833000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:69832400-69834600	Enhancers	NHDF-Ad	bronchial
20	chr8:69832600-69833000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:69832600-69833200	Enhancers	Aorta	Aorta
22	chr8:69832600-69833200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr8:69832600-69833400	Enhancers	Fetal Heart	heart
24	chr8:69832800-69833200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:69832800-69833400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr8:69832800-69833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:69832800-69833600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr8:69832800-69834400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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