Variant report

Variant	rs10095921
Chromosome Location	chr8:69779429-69779430
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69774615..69776136-chr8:69778095..69779612,2	MCF-7	breast:
2	chr8:69778375..69780629-chr8:69861166..69863483,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10091250	0.95[EUR][1000 genomes]
rs10091284	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10091347	0.97[EUR][1000 genomes]
rs10100825	0.97[EUR][1000 genomes]
rs10101976	0.97[EUR][1000 genomes]
rs10104083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs10104452	0.97[EUR][1000 genomes]
rs11985132	1.00[JPT][hapmap]
rs12334857	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16935176	1.00[JPT][hapmap]
rs16935184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs4474011	0.93[EUR][1000 genomes]
rs6472424	0.97[EUR][1000 genomes]
rs6472427	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6981271	0.93[EUR][1000 genomes]
rs6987520	0.83[EUR][1000 genomes]
rs73273774	0.81[EUR][1000 genomes]
rs73683758	0.97[EUR][1000 genomes]
rs73683764	0.83[EUR][1000 genomes]
rs7460149	0.83[EUR][1000 genomes]
rs7464267	0.93[EUR][1000 genomes]
rs7815951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs7821991	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7822932	0.97[EUR][1000 genomes]
rs7823746	0.83[EUR][1000 genomes]
rs7825981	0.93[EUR][1000 genomes]
rs7827405	1.00[JPT][hapmap]
rs7831860	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7832452	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7838608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69773200-69782800	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:69778000-69779600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:69779200-69779600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:69779200-69782600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:69779400-69781200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:69779400-69782800	Weak transcription	Osteobl	bone
7	chr8:69779400-69783200	Weak transcription	NHDF-Ad	bronchial

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