Variant report

Variant	rs7014621
Chromosome Location	chr8:69829699-69829700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10087739	1.00[ASN][1000 genomes]
rs10089897	1.00[ASN][1000 genomes]
rs10090892	1.00[ASN][1000 genomes]
rs10094648	1.00[ASN][1000 genomes]
rs10096087	1.00[ASN][1000 genomes]
rs10097876	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10101263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10104083	0.87[CEU][hapmap]
rs10109701	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11778752	1.00[CHB][hapmap]
rs11779221	1.00[ASN][1000 genomes]
rs1317211	1.00[ASN][1000 genomes]
rs16935184	0.87[CEU][hapmap]
rs17389034	1.00[CHB][hapmap]
rs17613697	1.00[ASN][1000 genomes]
rs1863590	1.00[ASN][1000 genomes]
rs28488124	1.00[ASN][1000 genomes]
rs28631008	1.00[ASN][1000 genomes]
rs28700205	1.00[ASN][1000 genomes]
rs28760971	1.00[ASN][1000 genomes]
rs28798408	1.00[ASN][1000 genomes]
rs28893292	1.00[ASN][1000 genomes]
rs2953963	1.00[ASN][1000 genomes]
rs2978225	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2978243	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2978246	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2978247	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs41466649	1.00[ASN][1000 genomes]
rs4265200	1.00[ASN][1000 genomes]
rs60318345	1.00[ASN][1000 genomes]
rs6472428	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981271	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987520	0.96[EUR][1000 genomes]
rs6991004	1.00[ASN][1000 genomes]
rs73273774	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73282699	1.00[ASN][1000 genomes]
rs73683764	0.96[EUR][1000 genomes]
rs7459898	1.00[ASN][1000 genomes]
rs7460149	0.96[EUR][1000 genomes]
rs7815951	0.87[CEU][hapmap]
rs7821207	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821581	1.00[ASN][1000 genomes]
rs7823746	0.96[EUR][1000 genomes]
rs7837124	1.00[CHB][hapmap]
rs7837210	1.00[ASN][1000 genomes]
rs7838608	0.81[EUR][1000 genomes]
rs7838741	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69808000-69833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69827200-69830600	Weak transcription	Fetal Brain Female	brain
3	chr8:69827600-69831000	Enhancers	Ovary	ovary
4	chr8:69827800-69834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:69828200-69830800	Enhancers	Colon Smooth Muscle	Colon
6	chr8:69828400-69830400	Enhancers	Fetal Lung	lung
7	chr8:69828800-69830400	Enhancers	Rectal Smooth Muscle	rectum
8	chr8:69828800-69833800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:69829000-69829800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:69829000-69829800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:69829000-69831600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:69829200-69830400	Weak transcription	Fetal Heart	heart
13	chr8:69829200-69830800	Enhancers	Fetal Brain Male	brain
14	chr8:69829400-69830000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:69829400-69830400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:69829400-69832200	Weak transcription	Osteobl	bone
17	chr8:69829400-69832400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:69829400-69832600	Weak transcription	Aorta	Aorta
19	chr8:69829600-69830000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:69829600-69830000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:69829600-69830600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:69829600-69830600	Weak transcription	Fetal Stomach	stomach
23	chr8:69829600-69831800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:69829600-69832000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:69829600-69832000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr8:69829600-69832000	Weak transcription	NHLF	lung
27	chr8:69829600-69832200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr8:69829600-69832200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:69829600-69832400	Weak transcription	NHDF-Ad	bronchial

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