Variant report

Variant	rs28631008
Chromosome Location	chr8:69884063-69884064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10087739	1.00[ASN][1000 genomes]
rs10089897	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10090892	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094648	1.00[ASN][1000 genomes]
rs10096087	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097876	1.00[ASN][1000 genomes]
rs10101263	1.00[ASN][1000 genomes]
rs10109701	1.00[ASN][1000 genomes]
rs11779221	1.00[ASN][1000 genomes]
rs1317211	1.00[ASN][1000 genomes]
rs17613697	1.00[ASN][1000 genomes]
rs1863590	1.00[ASN][1000 genomes]
rs28488124	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28700205	1.00[ASN][1000 genomes]
rs28760971	1.00[ASN][1000 genomes]
rs28798408	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28893292	1.00[ASN][1000 genomes]
rs2953963	1.00[ASN][1000 genomes]
rs2978225	1.00[ASN][1000 genomes]
rs2978243	1.00[ASN][1000 genomes]
rs2978246	1.00[ASN][1000 genomes]
rs2978247	1.00[ASN][1000 genomes]
rs41466649	1.00[ASN][1000 genomes]
rs4265200	1.00[ASN][1000 genomes]
rs60318345	1.00[ASN][1000 genomes]
rs6472428	1.00[ASN][1000 genomes]
rs6981271	1.00[ASN][1000 genomes]
rs6991004	1.00[ASN][1000 genomes]
rs7014621	1.00[ASN][1000 genomes]
rs73282699	1.00[ASN][1000 genomes]
rs7459898	1.00[ASN][1000 genomes]
rs7821207	1.00[ASN][1000 genomes]
rs7821581	1.00[ASN][1000 genomes]
rs7837210	1.00[ASN][1000 genomes]
rs7838741	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69879600-69917200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:69880200-69885600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:69882200-69884400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:69882400-69884200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:69882400-69884400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:69882800-69884200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:69882800-69884200	Enhancers	HSMM	muscle
8	chr8:69883200-69884200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:69884000-69884200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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