Variant report

Variant	rs41466649
Chromosome Location	chr8:69919167-69919168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69917837..69920843-chr8:69924623..69927326,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10087739	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089897	1.00[ASN][1000 genomes]
rs10090892	1.00[ASN][1000 genomes]
rs10094648	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10096087	1.00[ASN][1000 genomes]
rs10097876	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101263	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10109701	1.00[CHB][hapmap]
rs11779221	1.00[ASN][1000 genomes]
rs1317211	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17613697	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1863590	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28488124	1.00[ASN][1000 genomes]
rs28631008	1.00[ASN][1000 genomes]
rs28700205	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28760971	1.00[ASN][1000 genomes]
rs28798408	1.00[ASN][1000 genomes]
rs28893292	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2978225	1.00[CHB][hapmap]
rs4265200	1.00[ASN][1000 genomes]
rs60318345	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472428	1.00[ASN][1000 genomes]
rs6981271	1.00[ASN][1000 genomes]
rs6991004	1.00[ASN][1000 genomes]
rs7014621	1.00[ASN][1000 genomes]
rs73282699	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7459898	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7460339	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7821207	1.00[ASN][1000 genomes]
rs7821581	1.00[ASN][1000 genomes]
rs7837210	1.00[ASN][1000 genomes]
rs7838741	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41466649	SLCO5A1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69906400-69928400	Weak transcription	HSMM	muscle
2	chr8:69908600-69920400	Weak transcription	Osteobl	bone
3	chr8:69914200-69919200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:69916200-69919200	Enhancers	Brain Germinal Matrix	brain
5	chr8:69916600-69920000	Enhancers	Fetal Brain Female	brain
6	chr8:69917400-69920600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:69918200-69919200	Weak transcription	Fetal Brain Male	brain
8	chr8:69918200-69920000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:69918200-69924400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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