Variant report
| Variant | rs2978247 |
|---|---|
| Chromosome Location | chr8:69716360-69716361 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10089897 | 1.00[ASN][1000 genomes] |
| rs10090892 | 1.00[ASN][1000 genomes] |
| rs10096087 | 1.00[ASN][1000 genomes] |
| rs10109701 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11778752 | 1.00[CHB][hapmap] |
| rs11779221 | 1.00[ASN][1000 genomes] |
| rs17389034 | 1.00[CHB][hapmap] |
| rs17613697 | 1.00[ASN][1000 genomes] |
| rs28488124 | 1.00[ASN][1000 genomes] |
| rs28631008 | 1.00[ASN][1000 genomes] |
| rs28760971 | 1.00[ASN][1000 genomes] |
| rs28798408 | 1.00[ASN][1000 genomes] |
| rs2953963 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2978225 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2978243 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2978246 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4265200 | 1.00[ASN][1000 genomes] |
| rs6472428 | 1.00[ASN][1000 genomes] |
| rs6981271 | 1.00[ASN][1000 genomes] |
| rs6991004 | 1.00[ASN][1000 genomes] |
| rs7014621 | 1.00[ASN][1000 genomes] |
| rs73282699 | 1.00[ASN][1000 genomes] |
| rs7821207 | 1.00[ASN][1000 genomes] |
| rs7821581 | 1.00[ASN][1000 genomes] |
| rs7837124 | 1.00[CHB][hapmap] |
| rs7837210 | 1.00[ASN][1000 genomes] |
| rs7838741 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831349 | chr8:69555461-69733515 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv465703 | chr8:69641287-69814578 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv611462 | chr8:69641287-69814578 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1017131 | chr8:69676989-69792515 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69713600-69719000 | Weak transcription | Fetal Lung | lung |
| 2 | chr8:69715000-69722400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
