Variant report
| Variant | rs16935142 |
|---|---|
| Chromosome Location | chr8:69736659-69736660 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:69725101..69728063-chr8:69734380..69737954,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11989291 | 1.00[EUR][1000 genomes] |
| rs11997644 | 1.00[EUR][1000 genomes] |
| rs16919116 | 1.00[EUR][1000 genomes] |
| rs16935112 | 1.00[ASN][1000 genomes] |
| rs16935138 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16935168 | 1.00[EUR][1000 genomes] |
| rs16935176 | 1.00[EUR][1000 genomes] |
| rs16935210 | 1.00[EUR][1000 genomes] |
| rs55711798 | 1.00[EUR][1000 genomes] |
| rs55999027 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56118521 | 1.00[EUR][1000 genomes] |
| rs57592190 | 1.00[EUR][1000 genomes] |
| rs60141621 | 1.00[EUR][1000 genomes] |
| rs73277069 | 1.00[EUR][1000 genomes] |
| rs73683735 | 1.00[ASN][1000 genomes] |
| rs73683740 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73683746 | 1.00[EUR][1000 genomes] |
| rs73683749 | 1.00[EUR][1000 genomes] |
| rs73683752 | 1.00[EUR][1000 genomes] |
| rs7830651 | 1.00[EUR][1000 genomes] |
| rs7846528 | 1.00[EUR][1000 genomes] |
| rs7846617 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv465703 | chr8:69641287-69814578 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv611462 | chr8:69641287-69814578 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1017131 | chr8:69676989-69792515 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1031642 | chr8:69728620-69814849 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1033122 | chr8:69728620-69843088 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv1018791 | chr8:69729491-69814849 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69736000-69742200 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr8:69736200-69741400 | Weak transcription | Fetal Lung | lung |
