Variant report

Variant	rs73289410
Chromosome Location	chr8:69755184-69755185
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16935048	1.00[ASN][1000 genomes]
rs34207383	1.00[ASN][1000 genomes]
rs57043258	1.00[ASN][1000 genomes]
rs57996050	1.00[ASN][1000 genomes]
rs58257684	0.90[EUR][1000 genomes]
rs58757685	1.00[ASN][1000 genomes]
rs59404825	1.00[ASN][1000 genomes]
rs60283435	1.00[ASN][1000 genomes]
rs68191047	1.00[ASN][1000 genomes]
rs6999003	1.00[ASN][1000 genomes]
rs71517216	1.00[ASN][1000 genomes]
rs72652153	1.00[ASN][1000 genomes]
rs72668533	1.00[ASN][1000 genomes]
rs73683711	1.00[ASN][1000 genomes]
rs73683724	1.00[ASN][1000 genomes]
rs73683725	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69751200-69758600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:69751600-69762800	Weak transcription	Aorta	Aorta
3	chr8:69752400-69757800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:69752600-69755200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:69752600-69756000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:69752800-69757800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:69753000-69757800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:69753200-69755600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr8:69753400-69755800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:69753400-69758400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:69754800-69755600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:69754800-69755800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr8:69754800-69755800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:69755000-69755200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:69755000-69755200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:69755000-69755400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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