Variant report

Variant	rs60283435
Chromosome Location	chr8:69850953-69850954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16935048	1.00[ASN][1000 genomes]
rs16935249	0.98[EUR][1000 genomes]
rs34176595	0.98[EUR][1000 genomes]
rs34207383	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34781970	0.90[EUR][1000 genomes]
rs57043258	1.00[ASN][1000 genomes]
rs57996050	1.00[ASN][1000 genomes]
rs58757685	1.00[ASN][1000 genomes]
rs59404825	1.00[ASN][1000 genomes]
rs68191047	1.00[ASN][1000 genomes]
rs6999003	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71517216	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71517217	0.84[EUR][1000 genomes]
rs72652153	1.00[ASN][1000 genomes]
rs72668533	1.00[ASN][1000 genomes]
rs73289410	1.00[ASN][1000 genomes]
rs73683711	1.00[ASN][1000 genomes]
rs73683724	1.00[ASN][1000 genomes]
rs73683725	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69848200-69852400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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