Variant report
Variant | rs16935249 |
---|---|
Chromosome Location | chr8:69851410-69851411 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10104083 | 1.00[JPT][hapmap] |
rs11985132 | 1.00[JPT][hapmap] |
rs12334857 | 1.00[JPT][hapmap] |
rs13268876 | 0.88[ASN][1000 genomes] |
rs13275630 | 0.88[ASN][1000 genomes] |
rs16935176 | 1.00[JPT][hapmap] |
rs16935184 | 1.00[JPT][hapmap] |
rs34176595 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34781970 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4263778 | 0.94[ASN][1000 genomes] |
rs5009753 | 0.94[ASN][1000 genomes] |
rs5009754 | 0.94[ASN][1000 genomes] |
rs57507820 | 0.94[ASN][1000 genomes] |
rs60283435 | 0.98[EUR][1000 genomes] |
rs6998830 | 0.88[ASN][1000 genomes] |
rs6999003 | 0.90[EUR][1000 genomes] |
rs71517216 | 0.90[EUR][1000 genomes] |
rs71517217 | 0.82[EUR][1000 genomes] |
rs73683770 | 0.87[ASN][1000 genomes] |
rs73683771 | 0.94[ASN][1000 genomes] |
rs73683772 | 0.94[ASN][1000 genomes] |
rs73683773 | 0.88[ASN][1000 genomes] |
rs7464189 | 0.88[ASN][1000 genomes] |
rs7464277 | 0.88[ASN][1000 genomes] |
rs7815951 | 1.00[JPT][hapmap] |
rs7827405 | 1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1031633 | chr8:69766575-70322790 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | esv33049 | chr8:69836813-69943360 | Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:69848200-69852400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr8:69851000-69853200 | Enhancers | HSMM | muscle |