Variant report

Variant	rs6998830
Chromosome Location	chr8:69843088-69843089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10104083	1.00[JPT][hapmap]
rs11985132	1.00[JPT][hapmap]
rs12334857	1.00[JPT][hapmap]
rs13263644	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13266278	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13268550	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13268860	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13268876	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13275630	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16935176	1.00[JPT][hapmap]
rs16935184	1.00[JPT][hapmap]
rs16935249	0.88[ASN][1000 genomes]
rs34054971	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34176595	0.88[ASN][1000 genomes]
rs34261076	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34781970	0.94[ASN][1000 genomes]
rs4263778	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5009753	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5009754	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57507820	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71554633	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73683770	0.87[ASN][1000 genomes]
rs73683771	0.81[ASN][1000 genomes]
rs73683772	0.81[ASN][1000 genomes]
rs7460431	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7463208	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7464189	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7464277	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815951	1.00[JPT][hapmap]
rs7827405	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33049	chr8:69836813-69943360	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69836000-69848000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:69838200-69843200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:69839000-69843200	Weak transcription	HSMM	muscle

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